Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00888 ATGAGAAAGGGGGGGAATGGAGAAACGACGTCGTGTGCTTTGGTGGAAACCAAAGAAGGGCGCCACAGTGGAGGAGCTTACAGAGCTTTTGCGGCGACGGTCATGGCTTCAATTTTTCTGATATGGGCTTACAGAGCCACCGGGATGCCTGGGGCGGGCCACCCTGGGCGGTGGACTTGGATGGGAATGTTCATCTCTGAGATTATGTTTGGTGTTTATTGGATTCTCTCTCAGTCTCTTCGTTGGCGTCCCACTTTCAACTTTCCCTTCAAACATAAACTCTCTCTAAGCTACAATGACGACCAATTACCAAATGTCGACGTTTTCGTTTGCACAGCCGACCCCATTATCGAACCCCCGGTCTTGGTCATCAACACCATCTTATCCACTATGGCCTACGATTACCCAACTGAAAAATTGGCCATTTATCTCTCCGACGACGGGGGCTCCGAGTTCACATTCTATGCTCTTATCGAAGCTTCGAATTTCGCCAAGCATTGGTTGCCCTTTTGTAGAAAGTTCATGGTCGAGCCTACGTCTCCGGAGGCCTACTTTTCTCTCAATTCTGCTTTGCATCATCGTTCTCAAGAGTGGATCGACATGAAGAAACTGTTTGATGAAATGAAGGAGAGAATTAACTCGGTGGTTGAGATGGGGAAGGTTCCTAAGGAGATACGGGACCAGAACAAAGGTTTCTCTGAGTGGGACAATGGTATAACAAAGCAAAATCATCAATCAATTGTGAAGATAATAATTGATGGAAATAATCTAGATAATTTGGATATTGATGGAGGTGTACTACCAAAATTGGTGTACATGGCACGTGAAAAGAGACCCCACCATCCGCACCATTTTAAAGCTGGAGCTATGAATGCATTGATAAGAGTATCCTCAGAGATAACCAATGCTCCCTTCATCCTCAACTTAGACTGTGACATGTACTCAAATAATCCAGTCACACTAAAGGAGTTACTATGTTTTTTCCTGGATGGGAAAAGAAGCCATGACATTGCATTTGTACAATTCCCACAATGCTTTGATAACATTACAGAAAATATGTTATATGGCATTCCAGATCAAGTTGTTAATGAGATTGAACTAGCTGGCATGGATGGATATGGTGCTGCCTTGTATTGTGGCACTGGATGTTTCCATCGCAGAGAAGCTCTCGGCGGGAAGAAGTATGTTGAAGATCTTAATGGATCAATACATTTGGACGTGCAAACTCAAAAGAAAGTTCCAAAACCTGTTAATGAGTTGGAAGAAGCATGTAAGCTTCTCGTTGACTGCAACTTTGAAAATGGCTCTCAATGGGGAAGGGAGATGGGATTAGTATATGGGTGTGCAGTCGAAGATATTGTTACTGGGTTGACAATACAGTGCAGAGGTTGGAGATCACTTTACTATAGTCCAAAGAAAAGAGCTTTTTTAGGTCTTGCTCCGATTAGCTTGGATGTAGCTCTAGTTCAATATAAGAGGTGGTGTGAAGGCATGTTTCAAATTTTTTTGTCCAAGTATTGCCCCTTCATATACGGACATGGGAAGATCAAATTTGGTGCTCAAATGGGATATTGTGTATATCTTTTATGGGCTCCACTTTCTATACCAATGCTGTATTATGCCACCGTTCCTGCACTTTGTCTCCTTCAAGGCATTCCCTTATTCCCAGAGGCTACTAGCTTATGGGCCATACCTTTTGCATATGTCTTCGTAATCAAGAACTGTTGGAGCGTAGCTGAGGCAATAACTTGTGGCTGTACACTCAAAGCTTGGTGGAACTTACAAAGAATGTTACTTTTCAGAAGAACCACCGCATTCTTCTTTGCTTTCATCGACACAGTCATCAAGCAGTTGGGGCTTTCTCAAACTAAATTTGTTGTGACTGCTAAAGTCGCAGCGGAGGACGTGTCGAAGCGATACGAACAAGAGATCATAGAGTTTGGAAGCTCCGATATAATGTATACTATGATTGCAACATTTGCAATGCTAAACCTTTTTGGTTTATTGCTGGGAATTAAGAATGTTGCTGCTTTGAATTTGGAGTTGTTTTATGAAGGTTTGAACAAATTCATTCTCCAAATTGTTCTTTGTGGGCTAATTGTTTTGATAAACTTTCCCACATATGAAGCCCTCTTCATTCGCAAGGACAAGGGGCGTTTGCCATCCTCTGCTTTGTTCAAGTCTGTTACTTTGGCTTTATTGGCTTGTATAATATATGTATTGTAA 2226 42.36 MRKGGNGETTSCALVETKEGRHSGGAYRAFAATVMASIFLIWAYRATGMPGAGHPGRWTWMGMFISEIMFGVYWILSQSLRWRPTFNFPFKHKLSLSYNDDQLPNVDVFVCTADPIIEPPVLVINTILSTMAYDYPTEKLAIYLSDDGGSEFTFYALIEASNFAKHWLPFCRKFMVEPTSPEAYFSLNSALHHRSQEWIDMKKLFDEMKERINSVVEMGKVPKEIRDQNKGFSEWDNGITKQNHQSIVKIIIDGNNLDNLDIDGGVLPKLVYMAREKRPHHPHHFKAGAMNALIRVSSEITNAPFILNLDCDMYSNNPVTLKELLCFFLDGKRSHDIAFVQFPQCFDNITENMLYGIPDQVVNEIELAGMDGYGAALYCGTGCFHRREALGGKKYVEDLNGSIHLDVQTQKKVPKPVNELEEACKLLVDCNFENGSQWGREMGLVYGCAVEDIVTGLTIQCRGWRSLYYSPKKRAFLGLAPISLDVALVQYKRWCEGMFQIFLSKYCPFIYGHGKIKFGAQMGYCVYLLWAPLSIPMLYYATVPALCLLQGIPLFPEATSLWAIPFAYVFVIKNCWSVAEAITCGCTLKAWWNLQRMLLFRRTTAFFFAFIDTVIKQLGLSQTKFVVTAKVAAEDVSKRYEQEIIEFGSSDIMYTMIATFAMLNLFGLLLGIKNVAALNLELFYEGLNKFILQIVLCGLIVLINFPTYEALFIRKDKGRLPSSALFKSVTLALLACIIYVL 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10227880 10233678 + MELO3C024951.2.1 Cme01g00888 317864

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00888 741 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN CSLE 9 738 - -
Cme01g00888 741 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 9 738 - -
Cme01g00888 741 SUPERFAMILY Nucleotide-diphospho-sugar transferases 121 506 IPR029044 -
Cme01g00888 741 Pfam Cellulose synthase 402 740 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cme01g00888 741 Pfam Cellulose synthase 106 393 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cme01g00888 741 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 95 199 IPR029044 -
Cme01g00888 741 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 240 411 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00888 - - - csv:101211777 1407.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00888 Cme-Chr1:10227880 Cme01g01078 Cme-Chr1:13382641 2.28E-23 dispersed
Cme01g00888 Cme-Chr1:10227880 Cme01g00891 Cme-Chr1:10253437 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g686 . . Bda07g00415 Bda09g00440 . . Bma10g00595 . . . . Cma09g01018 . . . Cpe06g00826 Cpe02g00829 Bhi09g01787 Tan01g3202 Cmetu01g0091 . . . . . . . . . . . Cone6ag0005 . . . Lsi02g01818 Csa07g01068 . . . . . . Bpe11g00592 . . Bma14g00677 . . Cmo09g01021 . . . . . . . . . . . . . . . . . . . . . . Chy01g01136 Cme01g00888
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000615 3 9 2 4 3 1 3 2 2 3 1 2 3 4 3 3 2 4 3 2 3 1 2 3 4 2 2 8 4 2 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00888 Cme_Chr01 FPKM 8.388668 9.494007 9.607345 9.276775 9.381165 9.285853 9.209256 8.800399 8.486651 9.052314