Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00893 ATGACGGTATTTACAAAATCTGTTGCTATAAAGCACTGTTGTGTGGACAAAGGTCGGCCATTGCCAAAATTTGGTGAGTGGGATGTTAATGATCCGACATCAGCTGAGGGTTTCACCGTGATTTTTAACAAAGCTAGAGATGAGAAGAAAACAGGCGGCAAACCTGATTCACCTGGAAAAGTTGATGCACATGGCAGGACTGCACCAGATCCTGCCAAGGCACCTCCTAAGAAATGGCTTTGCTGTATCCAAAGTCCCACTGCTGAATCTTAA 273 44.69 MTVFTKSVAIKHCCVDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRTAPDPAKAPPKKWLCCIQSPTAES 90
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10257553 10259864 - MELO3C024949.2.1 Cme01g00893 317869

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00893 90 MobiDBLite consensus disorder prediction 44 67 - -
Cme01g00893 90 PANTHER RIN4, PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR CLEAVAGE SITE-RELATED 16 79 - -
Cme01g00893 90 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 16 51 IPR008700 -
Cme01g00893 90 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 16 79 IPR040387 -
Cme01g00893 90 MobiDBLite consensus disorder prediction 44 79 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00893 - - - csv:101212015 154.836
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00893 Cme-Chr1:10257553 Cme06g02766 Cme-Chr6:34903312 9.98E-33 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g682 . . . . . . . . . . . . . . Sed07g2758 . . Bhi09g01783 Tan01g3200 Cmetu06g0507 . . . . . . . . . . . . . . Cone15ag1275 . Csa03g00419 . . . . . . . . . . . . . . . . . . . Bhi11g00469 . . . . . . . . . . . . . . . Chy01g01137 Cme01g00893
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000283 4 7 1 2 4 5 8 5 5 5 5 5 8 3 5 7 1 5 8 0 5 5 5 1 5 5 4 9 5 4 141
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00893 Cme_Chr01 FPKM 8.794732 7.735295 24.754772 22.476665 39.274242 40.844597 49.80006 11.802575 10.350997 13.416614