Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00921 ATGGTAACAACCAACAAGCAATCAGAAGTCGAAACCTCTGCCGCCCTCGTTCTTCGTTCTGCTGCATTTCAATTTATAATCTCTTCCATGGCGCCTGTGACTGATCGAGCCGCAGGCGCCACTATTGCCGCCATCTCTGTTTCTGTTGTCCTCTTCTCTTATCTTTTTATTAAACACCATCCCAAGGATCGCTCCACGAAGAACACAAAACCCTTCTCTTTATCGAAGAGAAGTCCAAAAAATGGGGTTGTAGGCGCCATTGGCAACACCCCTTTGATACGGATTAACAGCCTCTCTGAGGCCACCGGTTGTGAGATTCTGGGGAAGTGCGAGTTCTTGAATCCTGGTGGGAGTGTAAAGGATAGAGTTGCAGTTAAGGTAATTGAAGAGGCCTTAGAATCTGGTGAGCTGGTTGAGGGTGGTGTAGTTACTGAGGGAAGCGCTGGAAGCACTGCTATAAGTCTTGCTACAGTTGCTCCAGCTTATGGTTGCAAGTGCCATGTGGTTATTCCAGATGACGCTGCTATTGAAAAATCTCAAATACTTGAAGCACTTGGAGCGCATGTTGAAAGGGTAAGACCAGTGTCAATTACTCACAGAGATCATTATGTTAACATTGCTAGAAGGAGAGCAGCACAAGCCAATGAGCTAGCTTTGAAGCGTAAAACTGAAGAGCAACTATGTGTGGGAGACTTGGAACAAATTAATGGTCACATTTATGACGGAGAAACCCAAGATTATTCTTTCTTAAGTAATTGCAAAGGTGGCTTCTTTGCTGATCAATTTGAAAACTTGGCAAATTATCGAGCTCATTATGAGGGTACGGGACCAGAGATTTGGGAACAAACTGGTGGGTGCATCGATGCCTTTATTGCAGCTGCGGGAACCGGTGGTACTGTGGCCGGTGTTTCTAGGTTTCTAAAGGAGAAGAATCCAAATGTCAAGTGTTTCCTCATAGATCCACCTGGTTCTGGCCTGTTCAACAAGGTGACTAGAGGAGTTATGTACACCAAAGAGGAGGCTGAAGGACGAAGATTAAAGAATCCTTTTGACACAATAACTGAAGGAATTGGAATCAATAGATTAACGCAGAATTTCTTGATGGCAGAACTTGACGGGGCATTTCGTGGAACAGACAGGGAAGCTGTTGAAATGTCAAGATATCTGTTGAGGAATGACGGGCTCTTTCTCGGGAGCTCTTCAGCCATGAATTGTGTTGGAGCTGTGAAATTGGCTCAATCAATTGGCCCCGGAAAAACCATCGTCACCATTCTTTGCGACAGTGGAATGAGGCATCTGAGCAAGTTTTTCAGTTCAGAGTATCTGAGTCGATACAATTTGACGCCCAAGGCTGCTGGCTTAGAATTCCTTGAATCCAGGTGA 1383 45.12 MVTTNKQSEVETSAALVLRSAAFQFIISSMAPVTDRAAGATIAAISVSVVLFSYLFIKHHPKDRSTKNTKPFSLSKRSPKNGVVGAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKVIEEALESGELVEGGVVTEGSAGSTAISLATVAPAYGCKCHVVIPDDAAIEKSQILEALGAHVERVRPVSITHRDHYVNIARRRAAQANELALKRKTEEQLCVGDLEQINGHIYDGETQDYSFLSNCKGGFFADQFENLANYRAHYEGTGPEIWEQTGGCIDAFIAAAGTGGTVAGVSRFLKEKNPNVKCFLIDPPGSGLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFLMAELDGAFRGTDREAVEMSRYLLRNDGLFLGSSSAMNCVGAVKLAQSIGPGKTIVTILCDSGMRHLSKFFSSEYLSRYNLTPKAAGLEFLESR 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10657448 10661311 - MELO3C024929.2.1 Cme01g00921 317897

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00921 460 PANTHER CYSTATHIONINE BETA-SYNTHASE 44 458 - -
Cme01g00921 460 PANTHER CYSTEINE SYNTHASE-RELATED 44 458 - -
Cme01g00921 460 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 109 127 IPR001216 GO:0006535
Cme01g00921 460 Gene3D - 253 268 IPR036052 -
Cme01g00921 460 Gene3D - 117 216 IPR036052 -
Cme01g00921 460 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 79 442 IPR036052 -
Cme01g00921 460 CDD CBS_like 88 434 - -
Cme01g00921 460 Pfam Pyridoxal-phosphate dependent enzyme 85 427 IPR001926 -
Cme01g00921 460 Gene3D - 87 116 IPR036052 -
Cme01g00921 460 Gene3D - 269 433 IPR036052 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00921 K01738 cysK; cysteine synthase [EC:2.5.1.47] - csv:101216270 787.334
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00921 Cme-Chr1:10657448 Cme02g00171 Cme-Chr2:1310875 6.94E-39 dispersed
Cme01g00921 Cme-Chr1:10657448 Cme05g01756 Cme-Chr5:26600179 2.36E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g655 . . Bda07g00407 . . . . . . . . . . Car09g00917 Sed07g2745 Cpe06g00815 . Bhi09g01756 Tan01g3186 Cmetu01g2159 . . Mch11g1263 . . . . . . . . Cone6ag0011 Cone9ag0010 . . Lsi02g01839 . . . . . . . Bpe11g00584 . . Bma14g00686 . . Cmo09g01007 . . . . . . . . . . . . . Cla09g02067 Cam09g2156 Cec09g2221 . . . . . . Chy01g01152 Cme01g00921
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010367 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00921 Cme_Chr01 FPKM 4.956661 4.704732 17.141504 18.026197 8.356179 7.514622 5.953122 25.438517 23.87542 22.978518