Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00925 ATGGGTAGCAAAGACGCTAGACAACCGCTGTTACCAACATCATCTAATACTCTAGAAACAAGGGTAATAGATATTCCTAGAAGCAAAAGACGATTGAGGCGCACCAAGAGTGCTCCTCATGCAAATTCTCCTACAGAGATCACCCGCACCAGCAACGTGCCGGCCACAGGTCCAGTTCCACGTTCAGGATTAATATTTGGAAATCTACACCCGAGTTTCAGAAGAGTAGCCTTAGTTTTAATAATATACCTGGGTATAGGAACTTTATGTTTTTACCTTGTCAGGTACCAAATCAAGGGGGAAAAATCAAACGGAATAGTTGATGCCATCTATTTCACTATTGTGACAATGACAACTGTTGGGTATGGAGATCTTGTCCCAAACAGTCCTTCCACAAAACTGCTAGCTTGTGCTTTCGTTTTCTCAGGAATGGCCCTAGTCGGCCTAATACTGAGCAATGCAGCTGATTATTTGGTAGAGAAGCAGGAAATCTTGCTATTTAAAGCCTTCCACATTCACCAAAATGGCCATTGTGACATTTCAAAAGAAATCGATACTAATAAAGCTAGAAACAAGTGTGTAGTGGTGTTTCTCCTTCTTCTTTTGTTCATCATTTCTGGGACTGCCTTTCTAGTTATCATTGAGAAGTTAGATTTTATTGATGCCTTTTATTGTGTATGTTCTACCATCACGACGCTAGGCTATGGAGATCAAAGCTTCTCGACCAAGTGGGGACGCATTTTTGCCATTTTCTGGATCTTGATAAGTACCATCACTCTAGCTCAGTTTTTCCTTTACATTGCTGAGCTAAACACTGAAAGAAGGCAAAAGTCTCTTGTGAAGTGGGTTCTAAGTGAAAAGGTGACAGACATAGACCTCGAGGTTGCAGATATCGATGATGACGGTGTTGTTGGGGCTGCGGAATTTGTGATATACAAGCTGAAGGAGATGGGGAAGATTACTGAAGATGACATTTCACCTGTGTTGGATGAATTTGAGAATCTTGATGTTGATCAATCAGGAACACTGTCCATATCTGACATAACACTTGCTCAATTATCTTAA 1065 41.03 MGSKDARQPLLPTSSNTLETRVIDIPRSKRRLRRTKSAPHANSPTEITRTSNVPATGPVPRSGLIFGNLHPSFRRVALVLIIYLGIGTLCFYLVRYQIKGEKSNGIVDAIYFTIVTMTTVGYGDLVPNSPSTKLLACAFVFSGMALVGLILSNAADYLVEKQEILLFKAFHIHQNGHCDISKEIDTNKARNKCVVVFLLLLLFIISGTAFLVIIEKLDFIDAFYCVCSTITTLGYGDQSFSTKWGRIFAIFWILISTITLAQFFLYIAELNTERRQKSLVKWVLSEKVTDIDLEVADIDDDGVVGAAEFVIYKLKEMGKITEDDISPVLDEFENLDVDQSGTLSISDITLAQLS 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10731582 10735026 + MELO3C024926.2.1 Cme01g00925 317901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00925 354 SUPERFAMILY EF-hand 281 349 IPR011992 -
Cme01g00925 354 PANTHER TWO PORE POTASSIUM CHANNEL A 21 348 - -
Cme01g00925 354 ProSitePatterns EF-hand calcium-binding domain. 297 309 IPR018247 -
Cme01g00925 354 SUPERFAMILY Voltage-gated potassium channels 186 288 - -
Cme01g00925 354 MobiDBLite consensus disorder prediction 38 55 - -
Cme01g00925 354 MobiDBLite consensus disorder prediction 29 55 - -
Cme01g00925 354 SUPERFAMILY Voltage-gated potassium channels 71 170 - -
Cme01g00925 354 Pfam Ion channel 199 270 IPR013099 -
Cme01g00925 354 Pfam Ion channel 79 159 IPR013099 -
Cme01g00925 354 Gene3D - 177 282 - -
Cme01g00925 354 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 21 348 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cme01g00925 354 PRINTS Two pore domain K+ channel signature 115 143 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cme01g00925 354 PRINTS Two pore domain K+ channel signature 231 240 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cme01g00925 354 Gene3D - 70 164 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00925 Cme-Chr1:10731582 Cme12g00812 Cme-Chr12:14658348 3.53E-126 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00925 K05389 - csv:101216032 644.039