Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00928 ATGGAGGGAAACCGAGGAAGCTTGGAGAGAATTGAAGTTCTGAGGAAAATCACAGAGCTAACTAGATCTATGATCGTCGAACTGAGCAATGGAAGCTCCAAGATGATCGCCATCGATCGGTTCAAAAGTTACTGCACCAATTCCCTTGAAAACTGTTGTTGTAGGTTCAATTTATCTGAAGGGAAGGATGTTCTAACACTTCAAAGGGAAAGCCATGTCCGTAGACTAGATGTCTTGCTTAGAGTTCTACTCATAATTCAGCAGCTTCTGCGAGAAAATAGACATAGCTCAAAGAGAGATATGTATTATATGCATCCCTCTATATTTACAGATCAGTCAGTTGTTGACCGGGCAATCAACGACATCTGCATTCTTTTGCAATGTAGCCGACATAATTTGAATGTGGTTTCTGTTGGTAATGGGTTGGTGATGGGTTGGTTGAGGTTCTCAGAAGCTGGCAGAAGATTTGATTGCTTGAAGAAGCCTAACAGTGCCCAATTTATTCCTGTTCAAGTTGAAGAAGTTACAGATATTGCTACTGCTGCAGACTACATTCTCGTTGTAGAGAAAGAATCAGTGTTTCAGCGTTTAGCAAATGACCGGTTCTGCAGCAGAAACCGGTGCATTGTAATCACGGGACGTGGATATCCAGATGTTCCCACTAGAAGGTTTTTGCGGCTTCTCGTTGATGTTTTGGCATTGCCTGCATTTTGTTTGGTAGATTGTGATCCATATGGTTTTGACATTCTGACTACATATCGTTTCGGTTCTATGCAAATGGCCTACGATGCAAAGAATCTCAGAATCCCACAACTACAATGGATTGGAGCTTTTGCTTCAGATTCTGAGAAATACGATCTACCAGAACAATGTCTCATCCCATTGACATCCAAGGACAAGAGAAGAACTGAAGCCTTGTTACAAAGATGCTACTTGCGGAGAGAGGTACCACATTGGAGGTTGGAATTGGACTCCATGCTTCAAAGAGGGGTGAAATTTGAGATTGAAGCACTGTCTGTGCACAATATTTCATTTTTGTCAGACCATTATTTACCATCCAAAATAGAAAGTGAACTAACAACCGGTAAACTCATAGGTGATTATCAATCCATACACTCTACCAACATGGGGTTGGTTTGGAATGGTAATGGAATGAGTTAG 1161 41.43 MEGNRGSLERIEVLRKITELTRSMIVELSNGSSKMIAIDRFKSYCTNSLENCCCRFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLRENRHSSKRDMYYMHPSIFTDQSVVDRAINDICILLQCSRHNLNVVSVGNGLVMGWLRFSEAGRRFDCLKKPNSAQFIPVQVEEVTDIATAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPTRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSMQMAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSKDKRRTEALLQRCYLRREVPHWRLELDSMLQRGVKFEIEALSVHNISFLSDHYLPSKIESELTTGKLIGDYQSIHSTNMGLVWNGNGMS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10792987 10802166 - MELO3C024924.2.1 Cme01g00928 317904

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00928 386 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 10 357 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cme01g00928 386 SUPERFAMILY DNA topoisomerase IV, alpha subunit 73 357 IPR036078 GO:0003677|GO:0005694
Cme01g00928 386 Gene3D - 140 359 - -
Cme01g00928 386 Pfam Type IIB DNA topoisomerase 74 135 IPR013049 GO:0003677|GO:0003824|GO:0005524|GO:0005694|GO:0006259
Cme01g00928 386 PRINTS DNA topoisomerase VI subunit A family signature 98 109 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cme01g00928 386 PRINTS DNA topoisomerase VI subunit A family signature 112 129 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cme01g00928 386 PRINTS DNA topoisomerase VI subunit A family signature 130 145 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cme01g00928 386 PRINTS DNA topoisomerase VI subunit A family signature 185 202 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cme01g00928 386 PRINTS DNA topoisomerase VI subunit A family signature 209 230 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cme01g00928 386 PRINTS DNA topoisomerase VI subunit A family signature 241 257 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cme01g00928 386 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11-1 10 357 - -
Cme01g00928 386 CDD TOPRIM_TopoIIB_SPO 183 345 IPR034136 -
Cme01g00928 386 Gene3D - 3 138 IPR036388 -
Cme01g00928 386 PRINTS SPO11 homologue signature 104 124 IPR013048 GO:0003677|GO:0003918|GO:0042138
Cme01g00928 386 PRINTS SPO11 homologue signature 199 214 IPR013048 GO:0003677|GO:0003918|GO:0042138
Cme01g00928 386 PRINTS SPO11 homologue signature 246 265 IPR013048 GO:0003677|GO:0003918|GO:0042138
Cme01g00928 386 PRINTS SPO11 homologue signature 281 305 IPR013048 GO:0003677|GO:0003918|GO:0042138
Cme01g00928 386 PRINTS SPO11 homologue signature 342 361 IPR013048 GO:0003677|GO:0003918|GO:0042138
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00928 K10878 SPO11; meiotic recombination protein SPO11 - csv:116405045 635.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00928 Cme-Chr1:10792987 Cme08g02343 Cme-Chr8:30402336 2.78E-74 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g649 . Blo03g01480 . . . Bpe08g01095 . . . . . Cma09g01003 . Car09g00914 . Cpe06g00811 . Bhi09g01751 . . . . Mch11g1260 . . . . . . . . . . . . Lsi02g01841 Csa07g00937 . . . . . . . . Bma07g01249 . . . Cmo09g01003 . . . . . . . . . . . . . Cla09g02064 Cam09g2153 Cec09g2218 . . . . . . Chy01g01164 Cme01g00928
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005619 0 4 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 1 1 1 3 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00928 Cme_Chr01 FPKM 24.306784 26.859919 16.004339 16.966536 30.039654 30.962931 28.211912 26.382334 26.456161 27.90626