Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00946 ATGGCTTCTCTCTCCCTCTTCTCTTTCTCTCCCACGCTTCACTCTGACTTTCCCTCTTCTTCGGATTTCTATTTCTCGTCCCAATTCCTACTCACTTCTTCCACTTCAGCCTCTAGTTTTCGTGCTGTCCCGATTGGTAGTCGGAGTAGGAGGAGGAATGTGCGTCGGTTTGTGGTCCGGTCTACTCACTCCAATGCTACCATTCTTAAGCCGAAATGGAGGTCGAGATTCGGTCAGACTTTGTCCCCTTATGATACCGATGAAGATGGGGATGATGTGGAGGAGTTCAGCAGTGATGGGGATGATGATGATGATGCTTGGCTGGATAACGGTGATTTCTCGGATGTTGAATATGATGCCAAAAGAAAGAGAGCCAAGTCACAAAGCAAAACCAGAAATAACAACTCACAGCGAGGTAACTTGAGACATCCCAGTGAAGGCAGGGGTATAAAATTCTCAAATGATGGAAAGAGTTTTAAAGTTAAGAGTAACCACCTTGATTTTCAAGATATCACAAATGATACTGTAAAACAAGACTTCAATGTTGATAAGGAAGTTCGTTCTACCCACACAGGCAGGAAAGGAAAGATGATGACCAAGAAGTCCATGGAAATTAGATTTCCTCGTCTGGCAGAAGAAATAGAATTGGACGAGAAATGGTTCCCTCTTCTTGATTATCTTACAACATTTGGGCTCAAGGAATCACATTTTCTCCAAATGTATGAGAGACACATGCCTTCTCTTCAAATAAATGTTTATTCTGCTCAAGAAAGACTAGAATACTTGTTAAGTGTTGGTGTCAAACAGAGGGATGTTCGAAGAATACTCTTGAGACAGCCCCAAATTCTGGAGTACACTGTAGAGAACAATTTGAAATCCCATGTTGCTTTCTTACTTAGTTTGGGAATTCCAAATTCCCGAGTGGGGCAGATCATTGCTGCTGCTCCATCTCTATTTTCTTATAGTGTTGAGAATTCATTAAAACCCACAGTCCGATACTTGGTCGAGGAAGTTGGCATCCAGGAAAAGGATCTGGGTAAAGTTGTGCAACTGAGTCCTCAAATCCTGGTTCAACGGATTGATATTTCATGGAACACCAGATATATGTTTCTTTCAAAGGAAATTGGAGCTCCTCGAGACAATGTAGTGAAGATGGTAACTAAACATCCTCAACTCCTCCATTATAGCATCAACGATGGGTTACTACCCAGGATCAATTTCCTTAGAAGTATTGGAATGCGAAATTCAGAGATCTTGAAAGTCTCAACTAGCCTTACACAGGTCTTTTCTCTGTCTCTGGAGGATAATTTGAAGCCCAAATACATGTATCTGATCAATGAACTCCGTAATGAAGTGAAATCACTTACCAAGTATCCCATGTATCTAAGCTTGTCCTTGGATCAGAGAATTCGACCTCGACACCGGTTCCTAGTTTCTCTTAAGAAAGCACCCAAGGGTCCGTTCCCTTTAAGTTCCTTTGTTCCAACTGATGAATGCTTTTGTGAGCAGTGGGCTGAAACCAGCCTAGATAAGTATCTTGAATTTAGGAAGAGATTACTATTGAAGGAGTTCGCGGAGAAATATGAAAGGAGACGATAA 1599 41.78 MASLSLFSFSPTLHSDFPSSSDFYFSSQFLLTSSTSASSFRAVPIGSRSRRRNVRRFVVRSTHSNATILKPKWRSRFGQTLSPYDTDEDGDDVEEFSSDGDDDDDAWLDNGDFSDVEYDAKRKRAKSQSKTRNNNSQRGNLRHPSEGRGIKFSNDGKSFKVKSNHLDFQDITNDTVKQDFNVDKEVRSTHTGRKGKMMTKKSMEIRFPRLAEEIELDEKWFPLLDYLTTFGLKESHFLQMYERHMPSLQINVYSAQERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLKSHVAFLLSLGIPNSRVGQIIAAAPSLFSYSVENSLKPTVRYLVEEVGIQEKDLGKVVQLSPQILVQRIDISWNTRYMFLSKEIGAPRDNVVKMVTKHPQLLHYSINDGLLPRINFLRSIGMRNSEILKVSTSLTQVFSLSLEDNLKPKYMYLINELRNEVKSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSSFVPTDECFCEQWAETSLDKYLEFRKRLLLKEFAEKYERRR 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10961290 10964348 + MELO3C024909.2.1 Cme01g00946 317922

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00946 532 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF9, CHLOROPLASTIC 47 524 - -
Cme01g00946 532 Pfam mTERF 287 482 IPR003690 GO:0003690|GO:0006355
Cme01g00946 532 Pfam mTERF 224 298 IPR003690 GO:0003690|GO:0006355
Cme01g00946 532 Gene3D Transcription termination factor 3, mitochondrial 281 519 IPR038538 -
Cme01g00946 532 MobiDBLite consensus disorder prediction 80 155 - -
Cme01g00946 532 PANTHER CGI-12 PROTEIN-RELATED 47 524 IPR003690 GO:0003690|GO:0006355
Cme01g00946 532 SMART mt_12 346 378 IPR003690 GO:0003690|GO:0006355
Cme01g00946 532 SMART mt_12 452 483 IPR003690 GO:0003690|GO:0006355
Cme01g00946 532 SMART mt_12 419 451 IPR003690 GO:0003690|GO:0006355
Cme01g00946 532 SMART mt_12 383 414 IPR003690 GO:0003690|GO:0006355
Cme01g00946 532 SMART mt_12 273 304 IPR003690 GO:0003690|GO:0006355
Cme01g00946 532 SMART mt_12 309 341 IPR003690 GO:0003690|GO:0006355
Cme01g00946 532 MobiDBLite consensus disorder prediction 85 112 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00946 K15032 MTERFD; mTERF domain-containing protein, mitochondrial - csv:101207692 884.789
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00946 Cme-Chr1:10961290 Cme01g01901 Cme-Chr1:27403631 4.17E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g617 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0026 Cone9ag0025 . . . . . . . . . . . . Bma07g01269 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme01g00946
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002407 4 3 3 3 1 1 2 1 2 2 1 1 2 2 2 1 1 4 2 2 1 1 0 2 2 1 2 5 2 2 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40733 PF02536 mTERF 1.10E-36 No_clan Cme TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00946 Cme_Chr01 FPKM 48.539669 56.814342 67.222878 63.210186 90.636398 86.438606 87.833473 74.781891 80.96981 78.233307