Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00973 ATGCCCGAGAAAGAGATTCACAATGTTGTTACAAAGCCTCGTCTTGTTGTTAGAAAGTTTCTGGCTAGGCCTCAGCATGAAGGCTTGGGCGCCATTGTTAGAAGGAGCATTGGAAGGTTTGAGCTGAAATACTTCGACCCTTTTCTGGTTTTGGATGAATTTTCTGTTACTGCCCCAGCTGGGTTCCCAGATCATCCACATAGAGGATTTGAGACTGTGACCTACATGCTGCAGGGAAGTGTGACACATGAAGATTTTGAAGGCCGCAAGGGAACAATAGGTGCAGGCGATTTGCAATGGATGACTGCAGGGAGAGGAATTGTACATTCAGAAATGCCTGCAGCCCAAGGTACCCAAAAGGGCCTCCAACTATGGATCAATCTATCTTCCAAGAACAAAATGATTGAGCCAAATTACCAAGAAGTTTCAAGCAAGGGAATTCCAGAAGCTTCAAAAGATGGAGTGAGAGTGAAAGTCATTGCTGGTGAGGCATTGGGAGCGAAATCACCAATCTACACAAGAACTCCAACCATGTACTTGGACTTCACTCTCAAGCCAAAAGCTCATGTCCAACAGCCGATCCCGTCATCTTGGAATGCATTCGTGTACATTCTTGAAGGCGAAGGCGTCTTCGGCAACTCAAAGGCGGCATCAACGACAGAGCATAACCTTCTTCTTCTGGGGTTCGGGGATGGTTTAGAGGTCTGGAATAAGTCAGGCAAGCCTCTTAGGTTCATTTTGGTAGGAGGTGAACCATTGAGTGAGCCTGTTGAGCAATTTGGGCCATTTGTGATGAACACTCAAGAAGAAATTGACCAAACAATTGATGATTTTGATAATTATACCAATGGGTTTGAGAAAGCAAGGCATTGGAGATCAGAAGCTGGGATTTCTCTTGGGTTCTAA 906 45.25 MPEKEIHNVVTKPRLVVRKFLARPQHEGLGAIVRRSIGRFELKYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGSVTHEDFEGRKGTIGAGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSSKNKMIEPNYQEVSSKGIPEASKDGVRVKVIAGEALGAKSPIYTRTPTMYLDFTLKPKAHVQQPIPSSWNAFVYILEGEGVFGNSKAASTTEHNLLLLGFGDGLEVWNKSGKPLRFILVGGEPLSEPVEQFGPFVMNTQEEIDQTIDDFDNYTNGFEKARHWRSEAGISLGF 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11384306 11388057 - MELO3C013100.2.1 Cme01g00973 317949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00973 301 Gene3D Jelly Rolls 27 279 IPR014710 -
Cme01g00973 301 PANTHER PIRIN-RELATED 2 297 IPR012093 -
Cme01g00973 301 PIRSF Pirin 12 292 IPR012093 -
Cme01g00973 301 Gene3D Jelly Rolls 148 253 IPR014710 -
Cme01g00973 301 PANTHER OS09G0484800 PROTEIN 2 297 - -
Cme01g00973 301 CDD cupin_pirin_C 176 252 - -
Cme01g00973 301 Pfam Pirin 34 126 IPR003829 -
Cme01g00973 301 CDD cupin_pirin_N 33 128 - -
Cme01g00973 301 Pfam Pirin C-terminal cupin domain 179 283 IPR008778 -
Cme01g00973 301 SUPERFAMILY RmlC-like cupins 14 293 IPR011051 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme01g00973 Cme06g02805 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00973 Cme-Chr1:11384306 Cme07g01841 Cme-Chr7:23878791 7.78E-151 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00973 K06911 - csv:101216351 600.897