Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00976 ATGAGAAACTTTGTACTTTCTGTAACCAGACGCATCGTTGTTAACTATATATCATCACCAGAGGTGGGATTTCTCAGAAGTATAGCTGCACGAGTTCCCCGCACAACAAAGTTGATCCTTCGGTTCTTAGGACCAACTGATACAGAGATTACCACCAATCAGACATATGGCTCGCTCTTACGAAATCTCACCTTTATCAAGACATTTGCTTCTGGAATTCTTGTTCCCAAGACTTATATATGGCCTATGGGTACAGATGGTTACGTACAGGCTCAAACCCCTCTTGTTTCTGATGCTCATAAAGCACAGCTGGAAGTTTTTGCATCAGAGTTCTTTAGTGACCTTCCACTAGGCTACAACTACAGTTATGATCCCGTTACTGAATACCTGTCTTACTTTGACAATGGTAAATTTTCAGTTGATGGTGTGCTCAGTGATTTCCCTATTACTCCATCGTCAGCTATTGACTGTTTTGCTCATCTGGATAAAAATGCCAAAAGTCAAGCCAAGCCTTTAGTTATTTCAAAATTTGGAGCTAGTGGAGACTATCCTGGTTGTACAGATTTGGCATATACCAATGCTATGTCAGATGGTGTCGAAGTGCTCGACTGTCCCGTTCAAATAACAAAAGATGGAATACCATTTTGCATGAGCTCAATTAATCTCATCGACAGCACAACAATATCTCAATCACCATTCATAAACCGTTCAAAAAACATCCCTGAAATTAGTCCTAACGACGCAATCTTTGCTTTTGACTTAACATGGGAAGAGATTCAAAGCCTGAGCCCGTCAATATTGAGCCCTTATTCGTCGAAGTATGCCTTGTTCCGAAACCCAAGGTTCCGAAACAAAGGGAATTTCACAACACTACCTGATTTCTTGGCCATGGCAAAGAATGCTGGCACTCTTTCTGGTGTCTTGATCCAAATTGAGAATGCAGCCTACCTTGCTAAGGATCAGGGTTTAAGTGTAACTGATGCGGTCTTGTCTTCCTTGAGCAAAGCTGGTTATGATAATCAGACAGCCGTTAAAGTATTGATTCAATCTCCAGATAGCGCTGTTCTAATGAAATTTAAACAGGAAAATAAAAACTACGAGCTTGTTTACAAAGTTGACCCACCAATTAGTGATGTGCTCAATACAACTGTTGAGGACATTAAGAGTTTTGCAGACTCCGTAACTATCACCAAGAACTCCGTCTTCCCTGTAAATCAGTTCTTTCTCACTGGAGCTACAAATGTTGTGAAGAAGCTGAAAGCACTCAATCTCTCTGTATATGTGGACACCTTCAGCAATGAATTTGTCTCTCAAGCATGGGATTTCTTCTCAGATGCAACAGTAGAGATCAACTCATTTGTTTTAGGAGCCGAAATTGATGGAGTCATCACTGACTTTCCAAAGACATCTGCTAGATATAAAAAGAACCGATGCTTAGCAATGAAAGAAACACCTAATTACATGAGCCCTGTCCAGCCTGGTAGCTTGTTGCAACTTGTTACTCCAAACTACTTGCCTCCAAAAACACCTCCGAGCCCGGTTCTAGATGACAAAGATGTAGCTGAGCCACCATTGCCTCCGGTTTCAGCCAAACCCCCTGCACCTGCTGGGGAAGGTGGCTCGACAGCAGCACCTCCAACTTCTAAACCCAACGGACAACCTAAGCTTGGAGCTGGAGCAGGCTTCTTGCTCTTGAACCTTGCCATACTTTCCATTGCTCTACTTCCATTCTGA 1734 42.39 MRNFVLSVTRRIVVNYISSPEVGFLRSIAARVPRTTKLILRFLGPTDTEITTNQTYGSLLRNLTFIKTFASGILVPKTYIWPMGTDGYVQAQTPLVSDAHKAQLEVFASEFFSDLPLGYNYSYDPVTEYLSYFDNGKFSVDGVLSDFPITPSSAIDCFAHLDKNAKSQAKPLVISKFGASGDYPGCTDLAYTNAMSDGVEVLDCPVQITKDGIPFCMSSINLIDSTTISQSPFINRSKNIPEISPNDAIFAFDLTWEEIQSLSPSILSPYSSKYALFRNPRFRNKGNFTTLPDFLAMAKNAGTLSGVLIQIENAAYLAKDQGLSVTDAVLSSLSKAGYDNQTAVKVLIQSPDSAVLMKFKQENKNYELVYKVDPPISDVLNTTVEDIKSFADSVTITKNSVFPVNQFFLTGATNVVKKLKALNLSVYVDTFSNEFVSQAWDFFSDATVEINSFVLGAEIDGVITDFPKTSARYKKNRCLAMKETPNYMSPVQPGSLLQLVTPNYLPPKTPPSPVLDDKDVAEPPLPPVSAKPPAPAGEGGSTAAPPTSKPNGQPKLGAGAGFLLLNLAILSIALLPF 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11457959 11465636 - MELO3C013101.2.1 Cme01g00976 317952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00976 577 CDD GDPD_SHV3_repeat_2 171 473 - -
Cme01g00976 577 ProSiteProfiles GP-PDE domain profile. 171 474 IPR030395 GO:0006629|GO:0008081
Cme01g00976 577 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 1 550 - -
Cme01g00976 577 Pfam Glycerophosphoryl diester phosphodiesterase family 178 469 IPR030395 GO:0006629|GO:0008081
Cme01g00976 577 SUPERFAMILY PLC-like phosphodiesterases 16 153 IPR017946 GO:0006629|GO:0008081
Cme01g00976 577 MobiDBLite consensus disorder prediction 507 556 - -
Cme01g00976 577 SUPERFAMILY PLC-like phosphodiesterases 170 473 IPR017946 GO:0006629|GO:0008081
Cme01g00976 577 Gene3D Phosphatidylinositol (PI) phosphodiesterase 169 473 IPR017946 GO:0006629|GO:0008081
Cme01g00976 577 Gene3D Phosphatidylinositol (PI) phosphodiesterase 3 153 IPR017946 GO:0006629|GO:0008081
Cme01g00976 577 ProSiteProfiles GP-PDE domain profile. 1 155 IPR030395 GO:0006629|GO:0008081
Cme01g00976 577 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPDL3 1 550 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00976 Cme-Chr1:11457959 Cme08g00823 Cme-Chr8:5450488 8.36E-13 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00976 - - csv:101216597 982.63