Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00979 ATGGTTACAGACCAAGAGCTTTCTCAAGCTATACAATGTCTTCTTCGCGACTCTGCTTCTCCTACAAACCCTAACCCTTTTTCTTCTTTAAACGCTGTTGTTCAGGAGTTGCAGACCAAGCTTGGTCTTGACCTCTCTCATAAACTCGATTTCATCCATGCCCAGATCCAATTTATCCTTCGTTCTCATCCTCAACAACCCCATCATCACCAACATCACCACCACCACCACCATCAGCAGCAGCAGCAGCAACAACAACTACCCTCTTCGCAGAAAGACCTCTTTGCCCTTCATCAAAGCCCTAATTTTCAATCTGCGCCTTCCCCCACTTCCTCTGCATTTCACACTTTCACTGCTCAGCCTCCGACGGCTAAGGCGGATTCCGTCGTTGCTCCCACTGTTCCGGGCTCTGACCCGCCAAAGGAAAGTACCCAAACCAAAACTAAGAGAAGAGGAGGCCCCGGGGGTCTAAACAAGCTTTGTGGTGTTTCTCCTGAACTTCAGGCTATTGTTGGCCAACCAGAATTACCGCGAACTGAGATAGTGAAACAGCTATGGGCATACATCAGAAAAAACAACCTACAGGATCCAAGTAACAAGAGGAAAATAATATGCAATGATGAGTTGCGGTTGGTATTTGAAACAGACTGCACTGACATGTTCAAAATGAATAAGTTGCTAGCCAAACACATCATTCCTCTTGAACCTACAAAACCATCAAGTTCTAAGAAGGCACGAGTGGAGAATGAATCTGCAGTTAGTGTTAAAAGTGCAGAACCCAGTATTTGTCCTTCTGTGATTATATCTGAAGCACTAGCAAATTTTTTTGGCGTCGATGGTAGGGAGATGCTCCAATCAGAAGTTCTGAGACGCATCTGGGAATACATAAAAGTGAATCATCTTGAGGACCCTCTGAACCCGATGGCAGTGTTGTGCGACGCAAAACTTCGAGAACTGTTTGGTTGTGAAAGCATTTCTGCACTGGGAATCCCAGAAGTTTTAGGCCGCCACCATATATTTAGGAGATCATGA 1032 45.45 MVTDQELSQAIQCLLRDSASPTNPNPFSSLNAVVQELQTKLGLDLSHKLDFIHAQIQFILRSHPQQPHHHQHHHHHHHQQQQQQQQLPSSQKDLFALHQSPNFQSAPSPTSSAFHTFTAQPPTAKADSVVAPTVPGSDPPKESTQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPSSSKKARVENESAVSVKSAEPSICPSVIISEALANFFGVDGREMLQSEVLRRIWEYIKVNHLEDPLNPMAVLCDAKLRELFGCESISALGIPEVLGRHHIFRRS 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11546228 11550835 - MELO3C013104.2.1 Cme01g00979 317955

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00979 343 CDD SWIB-MDM2_like 161 231 - -
Cme01g00979 343 Pfam SWIB/MDM2 domain 161 231 IPR003121 -
Cme01g00979 343 Pfam SWIB/MDM2 domain 267 337 IPR003121 -
Cme01g00979 343 SUPERFAMILY SWIB/MDM2 domain 261 338 IPR036885 -
Cme01g00979 343 CDD SWIB-MDM2_like 266 337 - -
Cme01g00979 343 MobiDBLite consensus disorder prediction 65 80 - -
Cme01g00979 343 MobiDBLite consensus disorder prediction 81 123 - -
Cme01g00979 343 ProSiteProfiles SWIB/MDM2 domain profile. 156 233 IPR003121 -
Cme01g00979 343 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 1 339 - -
Cme01g00979 343 SUPERFAMILY SWIB/MDM2 domain 150 236 IPR036885 -
Cme01g00979 343 MobiDBLite consensus disorder prediction 64 160 - -
Cme01g00979 343 Pfam DEK C terminal domain 2 59 IPR014876 -
Cme01g00979 343 PANTHER - 1 339 - -
Cme01g00979 343 SMART swib_2 262 343 IPR019835 -
Cme01g00979 343 SMART swib_2 157 236 IPR019835 -
Cme01g00979 343 ProSiteProfiles SWIB/MDM2 domain profile. 261 340 IPR003121 -
Cme01g00979 343 Gene3D SWIB/MDM2 domain 152 242 IPR036885 -
Cme01g00979 343 Gene3D SWIB/MDM2 domain 259 342 IPR036885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00979 K15223 UAF30, SPP27; upstream activation factor subunit UAF30 - csv:101217066 624.394
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00979 Cme-Chr1:11546228 Cme11g00230 Cme-Chr11:2657934 1.12E-17 dispersed
Cme01g00979 Cme-Chr1:11546228 Cme06g00283 Cme-Chr6:1724696 3.93E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g593 Blo03g00535 Blo03g01462 Bda07g00384 Bda09g00413 . Bpe08g01108 . . . . Cma01g01104 . Car01g00976 . . . Cpe02g00797 Bhi09g01716 . . . . . . . . . . . . . Cone6ag0039 Cone9ag0041 . . Lsi02g01868 Csa07g00991 . . . . . . Bpe11g00562 . Bma07g01280 Bma14g00318 . Cmo01g01150 . . . . . . . . . . . . . . Cla09g02037 Cam09g2126 . . . . . . . Chy01g01071 Cme01g00979
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004875 2 3 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40734 PF02201 SWIB 2.10E-18 No_clan Cme TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00979 Cme_Chr01 FPKM 3.442276 3.228994 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0