Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01016 ATGGACTGGACCAGAGGCCCCCCCGTCGGCCGCGGCTCCTCCGCCACCGTCTATATGGCTACACTCAACTCCTCCGGCCAACAATTTGCCGTCAAATCCACCAACCTTGCATCATCGGCCCTCTTGCACAAGGAACACGCTCTTCTCTCCAATTTGAGCTCCCCATACCTAATCAAGTGTCTAGGTTTCGACGTTGAAACCCAACCCCTCAATCCGCCGGTGTTCAATCTGTTCATGGAGTATTTTCCGGAGGGGACTCTGTGGGACGCGATTCAGATCAACGGCGGTCGAATTGAGGAATCGATGATCGGAGTATTTTCGCGGCAGATTCTCAAAGGATTGGAGTACCTTCATGCTAATGGATTGGCACATTGCGATATCAAGAGCCGGAATCTGTTACTGAGTGATGAGGGTTTGAAAATTGCCGATCTAGGTTGTGCGAAATTTGTGGATGGAATTTCCGGTAATGGAGTTGGGGCTTTTTCTGGTTCGCCGGCGTTCATGGCTCCGGAAGTTGCAAGAGGTGAAGAACAGGGATTTCCGGCGGATGTTTGGGCTTTTGGATGTACAGTCATTGAAATGGCTACTGGGGATCATCCATGGCCGGAAATAGAGGATCCGGTTTCGGCGTTGTATCGGATTGGATTTTCCGGCGAGGTACCAGAGATTCCGCGGTGGTTGTCGGAAAGTGCGAAAGATTTTGTCGCCAAGTGTTTGATAAAAGACCCGAAAGAAAGATGGAGTGTGAAACGGCTTCTGGAGCATCCGTTTCTTGAAGGATTTGATTCTGAATCAGAGATTGAAGGGTCGAGGATGAAAACGGTGAATTCTTCTTCTCCGAGCTGTGTTTTGGATCAGAGGTTTTGGGATTCAATGGAAGATTTGGAGTCTCCATCGAAGGTGACTCAACAAGCTTCTTTGGTGGATTGTCCAGCTGAGAGGATTAGAAGGTTGGCTGATAATTTGTCTTGTGATTTGGAATTGGAATGGGATGATGGAGATTGGGTTTTGATCAGAAACAATGGGGTCGGCGGTGGAAGCCATGGAAATGGATCTGTGAGCTTAGATTTTTGTGCTACAATTGAAGAAGAAGATGAAATTTTGAACTTGGAAATTGAAGAAAATTCTGTATTGTTCTGTTTAGTTGATGATGATTTTAGTGTTGTGAACAGTAGGAATGGAGGATTAGAAATGGAATTAAAGAGTGATTTTATGTTGGAAACTGTTGAAAATCATTTTTCTTTTACATTAATTCAAATTCATCTCTTATTTCCTCATGATCTTCATCTTCCTCTTTTGTTATCTTTTCCAAATTTGACATGTCTCATTGCCTTGTTCAAGAATTATAGTTTGGTCAAACTAAAAGTGAAAGGTTATCCTGGCAAGGATGGGCAGGAAGTGGAAGTTGATGTTGAGCATGGGGATGGGTCGAAAGTGGAAGTTGATGATGGGCATGAGGATGGACAGAAAGTGGAAGTTGATGCTAAGCATGAGGATGGGCAAGAAATGGAAGTTGATAATAGGCATAAGGATGGGTGGGAAGTGGAAGTTAATATTGAGCATGAGGATGGGTGGGAAGTAGAAGTTGATGCTAGACATGAGGATGGGCAGAGGGAGCATTATCATCTCGAAGAGGAGCAACGAGGTTATCTTCGTAACCTTCTATAG 1668 44.84 MDWTRGPPVGRGSSATVYMATLNSSGQQFAVKSTNLASSALLHKEHALLSNLSSPYLIKCLGFDVETQPLNPPVFNLFMEYFPEGTLWDAIQINGGRIEESMIGVFSRQILKGLEYLHANGLAHCDIKSRNLLLSDEGLKIADLGCAKFVDGISGNGVGAFSGSPAFMAPEVARGEEQGFPADVWAFGCTVIEMATGDHPWPEIEDPVSALYRIGFSGEVPEIPRWLSESAKDFVAKCLIKDPKERWSVKRLLEHPFLEGFDSESEIEGSRMKTVNSSSPSCVLDQRFWDSMEDLESPSKVTQQASLVDCPAERIRRLADNLSCDLELEWDDGDWVLIRNNGVGGGSHGNGSVSLDFCATIEEEDEILNLEIEENSVLFCLVDDDFSVVNSRNGGLEMELKSDFMLETVENHFSFTLIQIHLLFPHDLHLPLLLSFPNLTCLIALFKNYSLVKLKVKGYPGKDGQEVEVDVEHGDGSKVEVDDGHEDGQKVEVDAKHEDGQEMEVDNRHKDGWEVEVNIEHEDGWEVEVDARHEDGQREHYHLEEEQRGYLRNLL 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12531247 12541621 + MELO3C013150.2.1 Cme01g01016 317992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01016 555 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Cme01g01016 555 CDD STKc_MAPKKK 2 258 - -
Cme01g01016 555 SMART serkin_6 3 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01016 555 Gene3D Transferase(Phosphotransferase) domain 1 2 316 - -
Cme01g01016 555 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 357 - -
Cme01g01016 555 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Cme01g01016 555 Pfam Protein kinase domain 7 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01016 555 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 15 1 357 - -
Cme01g01016 555 ProSiteProfiles Protein kinase domain profile. 3 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01016 555 SUPERFAMILY Protein kinase-like (PK-like) 3 302 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00692 Cme-Chr1:6360257 Cme01g01016 Cme-Chr1:12531247 3.51E-07 dispersed
Cme01g01016 Cme-Chr1:12531247 Cme11g00827 Cme-Chr11:10812050 6.81E-99 dispersed
Cme01g01016 Cme-Chr1:12531247 Cme01g00435 Cme-Chr1:3147153 4.82E-105 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64604 PF00069 Pkinase 3.10E-51 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01016 K20716 - csv:101205426 802.742