Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01022 ATGGGTCAGATCGTGAAGAGGAAGAAGAAAGGTAGACCATCGAAGGCAGATCTGGCACGGCGGTCCGGTGGAGGACTAACATCGTCGGAATCTGAACCACGTCGGAGTCTCCGTCGCCGTAATGTGAGGTACAACATCGATTACGACGACTTTCTTGAAGAAGACGATGAGGATGAGGAAGAGGACGAGAGGAGGAGAGAGAAGAAGCTTAAGCTTGTTGTCAAGCTGAACCAAGGAAGAGATGGAACGCATCTATCTCCAGTGGATGGAGTCTCTAGGTTAGAGGCGCGTGATGTACACGCGCCTGAGTATGGTTCTTCGGCGTCGGAAGGTGAAGAAGATGAACCAGAGAGGAAGCCATTGAAGAAGAGGAGGATTGGTGGTGGTGAAGAAGAGGATGAAGATGATGAGTACGACGATCAAATTCGTGGAGATGAAAATGAAGACGATGACATTGATGAGGAAAGGGGGGGAAGGAAGGTGGGCTCAAAAGGGTCCGACTCTGTTCCAGGGACTCCATCAGATCGATCATCTGGGTTACCATTACCTGATAAGAAGACATTGGAGTTGATTCTCGACAAACTTCAGAAGAAGGATACCTATGGTGTCTATGCGGAACCAGTTGATCCTGAAGAGCTGCCTGACTATCACGATGTCATTGATCATCCTATGGACTTTGCTACCGTAAGGAATAAGTTGACCAACGGATCATATTCAACTTTGGAACAGTTTCAG 735 48.16 MGQIVKRKKKGRPSKADLARRSGGGLTSSESEPRRSLRRRNVRYNIDYDDFLEEDDEDEEEDERRREKKLKLVVKLNQGRDGTHLSPVDGVSRLEARDVHAPEYGSSASEGEEDEPERKPLKKRRIGGGEEEDEDDEYDDQIRGDENEDDDIDEERGGRKVGSKGSDSVPGTPSDRSSGLPLPDKKTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIDHPMDFATVRNKLTNGSYSTLEQFQ 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12616065 12617795 + MELO3C027396.2.1 Cme01g01022 317998

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01022 245 MobiDBLite consensus disorder prediction 111 130 - -
Cme01g01022 245 Pfam Bromodomain 190 245 IPR001487 GO:0005515
Cme01g01022 245 MobiDBLite consensus disorder prediction 32 48 - -
Cme01g01022 245 MobiDBLite consensus disorder prediction 1 185 - -
Cme01g01022 245 MobiDBLite consensus disorder prediction 1 15 - -
Cme01g01022 245 SUPERFAMILY Bromodomain 166 245 IPR036427 GO:0005515
Cme01g01022 245 PRINTS Bromodomain signature 213 229 IPR001487 GO:0005515
Cme01g01022 245 PRINTS Bromodomain signature 199 212 IPR001487 GO:0005515
Cme01g01022 245 PRINTS Bromodomain signature 229 245 IPR001487 GO:0005515
Cme01g01022 245 ProSiteProfiles Bromodomain profile. 196 245 IPR001487 GO:0005515
Cme01g01022 245 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 244 - -
Cme01g01022 245 Gene3D - 183 245 IPR036427 GO:0005515
Cme01g01022 245 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 1 244 - -
Cme01g01022 245 MobiDBLite consensus disorder prediction 131 152 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01022 K22184 BRD9; bromodomain-containing protein 9 - cmo:103503278 411.764
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01022 Cme-Chr1:12616065 Cme01g01147 Cme-Chr1:14755047 1.92E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g528 . . . . . . Bma10g00553 Bma13g01065 . . . Cma09g00958 Car01g00997 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme01g01022
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019937 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 4
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01022 Cme_Chr01 FPKM 0.540404 0.189485 0.231468 0.616081 1.045782 1.034737 1.420733 0.270486 0.15282 0.161008