Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01030 ATGGAAACAATCGAAGAAGCCAAAAACATTGCGAAAACTTTTGTAAAACTTGATTTGAATCAGAAATCCAGTTCCCAGCCTACTTATTCTAATACCTTCGTTAAATCTGCGTCTCCCGATTTGGATCAGAAATCCTGTTTCAAGCCTACTGCATCTCAATTCTCCCGATTGGCCTTTGAGAGGAAGAAACCTCCAAATTTAGTCAGTTTGTGCGTTGGGGTTATTGGAAAGCATTTGGAAGATATAATTCCTGACTTAGATGAGATTAGTGCCAACTTTCCGTCAGATGTGAAGCAATCGATAGCAGCAGTTGCACGAAGAAGAGAATTACTGAACGATGATGTTATTATCTCCCTAGTAGATAGTTCGTGGGAAACCCTGGATGTTTCTGGTTCAGAAGTTTCTGATTTTGGGTTAGCAGAAATTGGCAAGACATGCAAATCTCTTAGAGCTGTGGATATTAGTCGATGCAACAAGATAACAGCTGCTGGTGTTTCTGAGCTGGTTCAGCATTGTTGTTCCTTGGAAACCCTACGTTGCGGAGGGTGTCCGAGGAGTGATGCCACGGCACGAAGGTCCTTGGATATTTTTAAACCAAGGCTGGATGATATAGAAGGAGATTCATGGGAGGAGCTTGATACAGCTGAAATTGCCAATGGGGCACAATCCCTTCGGTGGTTGGTCTGGCCAAAAATAGATAAAGATTCCTTGGAGATTTTCTCCACAGAATGCCCGCGCATTACAATAAACCCAAAGCCATCCCCTTTCGGTTTCAGGGGGAAGCAGGTTCCAGGGGAAGCATTGCCAAACATTGCATTAGACGAACACACCATAGTTGATATTGATCCCAAAACATGGGCGGTGGGCAGATCCACAGGAAGGGCCCCAATTTCTCCATCAAATCCCTCAGAATTGTCTTTAGCTGAGAAATTCAGACTTGCATTTGTGGAAAGGGACACTCGGTTAGCTCCGAAACGAGCTAAAAATGCGAGGCAACATCAAAGGCGTGCAGAGAGGGAGTGGATGACGACGAGTACAAGAGCCAAGGCTCTGGCCTTGGCATCTCAAGCAAGTAAAAGTTTGCAGAGTCGTACTTAG 1098 44.72 METIEEAKNIAKTFVKLDLNQKSSSQPTYSNTFVKSASPDLDQKSCFKPTASQFSRLAFERKKPPNLVSLCVGVIGKHLEDIIPDLDEISANFPSDVKQSIAAVARRRELLNDDVIISLVDSSWETLDVSGSEVSDFGLAEIGKTCKSLRAVDISRCNKITAAGVSELVQHCCSLETLRCGGCPRSDATARRSLDIFKPRLDDIEGDSWEELDTAEIANGAQSLRWLVWPKIDKDSLEIFSTECPRITINPKPSPFGFRGKQVPGEALPNIALDEHTIVDIDPKTWAVGRSTGRAPISPSNPSELSLAEKFRLAFVERDTRLAPKRAKNARQHQRRAEREWMTTSTRAKALALASQASKSLQSRT 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12714292 12717431 - MELO3C013160.2.1 Cme01g01030 318006

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01030 365 PANTHER UNCHARACTERIZED 28 364 - -
Cme01g01030 365 SUPERFAMILY RNI-like 125 188 - -
Cme01g01030 365 Gene3D Ribonuclease Inhibitor 45 224 IPR032675 -
Cme01g01030 365 MobiDBLite consensus disorder prediction 324 347 - -
Cme01g01030 365 PANTHER OS06G0679700 PROTEIN 28 364 - -
Cme01g01030 365 SMART LRR_CC_2 121 145 IPR006553 -
Cme01g01030 365 SMART LRR_CC_2 146 171 IPR006553 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01030 - - - csv:101203553 679.478
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g517 . Blo03g01453 . . . Bpe08g01120 . . . . Cma01g01127 . . . Sed04g3213 . Cpe02g00775 Bhi09g01650 Tan01g4558 Cmetu01g1354 . Hepe01g1269 Mch11g1193 . . . . . . . . . . . . Lsi02g01901 Csa07g01096 . . . . . . . . Bma07g01293 . . Cmo01g01178 . . . . . . . . . . . . . . Cla09g01012 Cam09g1069 Cec09g1069 Cco09g1087 . . Cre09g1033 . . . Cme01g01030
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012078 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01030 Cme_Chr01 FPKM 13.643098 18.231621 9.681035 7.29222 8.220601 4.809951 6.470373 7.568008 7.446687 8.070343