Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01052 ATGAAGTTCAAAGTCTCATGGTTGAGGAACATCACCGCTGAAGATTTCCATGGAAAATTCAAATTAGGGTTCCAATCAAACCTAGTAAAAGGTTTTCTTCCTCACACTCCCACTTCACACAGGCCCTTCTCCGTCGTCTCGGATCGTATTCATCATATACTAAGTTGTGAGAATCTAACCCCTCGGCCTAGAAACTGTCATGAAAGAACTCTGGTTTCCAACTCTATTGCTGACTCCGATGAACCCATAACCGTTCATCGAGATGACCCATCTGCTGTTTATGTCCAAAACGTCCTTTATTTCAGAAGGCACAAACCAGTGGAGGAGATCGACAGGGCTCTTAGTCTATGCGACCTTGTGCTAACCGAAGATTTTGTTCTCAAGGTGCTGCGAAGACATCGATCAGATTGGAAACCCGCCTTCATTTTCTTCAATTGGGTTACCAAAAAAGGTACTAACGAAGATAAATTCACCCCTGGTTCTGTTATTTACAATGAGATTCTTGATATTCTCGGGAAATCCCACCGCTTTGAGGAAGTAGACAAGGTGTTTGTGGAAATGTCTAAGAGAAAAGAACTTGTTAATGAGGAAACGTATTCAGTTCTTCTTAATAGATATGCTGCAGCTCATAAAGTGGAGGAAGCGATCAGCATTTTCTACAGAAGGCAAGAATTTGGACTTGAGATGAATTTGATTGCATTTCAGTCACTTTTGATGTGGTTATGCAGATACAAGCACGTAGAAGCTGCAGAGACCCTGTTCCATTCCAAGAAGCATGAGTTTGTTATTGATATAAAGACGAGCAATATTATCCTCAATGGGTGGTGTGTGTTGGGGAATGTTCATGAGGCCAAAAGGTTTTGGAGGGAGATAATTGAATCAAAATGCGAGCCTGATATTTACACTTATGGAACTTTGATTAACTCATTGACAAAGAAAGGAAAGCTGGGGACAGCTTTGAAGTTGTTTAGAGCCATGTGGGAGAGAGGATTGAAAACTGATGTTGTGATCTGCAATTGCATCATTGATGCCCTTTGTTTCAAGAAGAGGATTCCTGAAGCTCTAGAGATCTTCAAGGAAATGAACGAGAGAGGGTGTGCAGCAAATGTTGCAACTTACAACACTCTTATCAAACACCTTTGTAAGATTAGGAGGATGGAGAAGGTTAATGAGCTTTTGAATGAAATGGAAGAGAGAAAGGGGAGCTGTTGGCCAAATTCTGTGACTTTTAGCTATTTACTCAGGTCGATAAGGGGTCCGGAGGAAGTTCCTGTACTCTTGCAAAGGATGGAAACAAGTGGCTGCAAGATGACTAGTGACATATACAATCTGATTCTGAGATTGTATATGGACTGGAATATACAGGAAAGGGTTAAGTCTACTTGGAATGAAATGAAAGAGATGGGGTTGGGACCCGATCGTCGCTCTTACACGATTATGATTCATGGGTTGTATGAGAAGGGAAGAACAAAAGATGGGCTGCGCTATTTCAATGAAATGACATTGAGGGGAATTATGCCGGAGTCGAAGACCGAAAAGTTGGTGAATGCTACGAATGTCAAAGACTCAAAATGCCAGAAAGGAGAGCCAAGTAGAAAAGCTTATTAA 1608 41.48 MKFKVSWLRNITAEDFHGKFKLGFQSNLVKGFLPHTPTSHRPFSVVSDRIHHILSCENLTPRPRNCHERTLVSNSIADSDEPITVHRDDPSAVYVQNVLYFRRHKPVEEIDRALSLCDLVLTEDFVLKVLRRHRSDWKPAFIFFNWVTKKGTNEDKFTPGSVIYNEILDILGKSHRFEEVDKVFVEMSKRKELVNEETYSVLLNRYAAAHKVEEAISIFYRRQEFGLEMNLIAFQSLLMWLCRYKHVEAAETLFHSKKHEFVIDIKTSNIILNGWCVLGNVHEAKRFWREIIESKCEPDIYTYGTLINSLTKKGKLGTALKLFRAMWERGLKTDVVICNCIIDALCFKKRIPEALEIFKEMNERGCAANVATYNTLIKHLCKIRRMEKVNELLNEMEERKGSCWPNSVTFSYLLRSIRGPEEVPVLLQRMETSGCKMTSDIYNLILRLYMDWNIQERVKSTWNEMKEMGLGPDRRSYTIMIHGLYEKGRTKDGLRYFNEMTLRGIMPESKTEKLVNATNVKDSKCQKGEPSRKAY 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13052236 13055712 - MELO3C013175.2.1 Cme01g01052 318028

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01052 535 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 46 530 - -
Cme01g01052 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 333 IPR002885 -
Cme01g01052 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 473 507 IPR002885 -
Cme01g01052 535 SUPERFAMILY HCP-like 268 368 - -
Cme01g01052 535 PANTHER OS01G0151900 PROTEIN 46 530 - -
Cme01g01052 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 298 IPR002885 -
Cme01g01052 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 229 IPR002885 -
Cme01g01052 535 Pfam PPR repeat family 264 311 IPR002885 -
Cme01g01052 535 Pfam PPR repeat family 159 206 IPR002885 -
Cme01g01052 535 Pfam PPR repeat family 334 382 IPR002885 -
Cme01g01052 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Cme01g01052 535 Gene3D Tetratricopeptide repeat domain 401 527 IPR011990 GO:0005515
Cme01g01052 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 399 IPR002885 -
Cme01g01052 535 Gene3D Tetratricopeptide repeat domain 258 327 IPR011990 GO:0005515
Cme01g01052 535 Gene3D Tetratricopeptide repeat domain 110 257 IPR011990 GO:0005515
Cme01g01052 535 Gene3D Tetratricopeptide repeat domain 328 400 IPR011990 GO:0005515
Cme01g01052 535 Pfam PPR repeat 476 505 IPR002885 -
Cme01g01052 535 TIGRFAM PPR: pentatricopeptide repeat domain 372 400 IPR002885 -
Cme01g01052 535 TIGRFAM PPR: pentatricopeptide repeat domain 162 195 IPR002885 -
Cme01g01052 535 TIGRFAM PPR: pentatricopeptide repeat domain 301 334 IPR002885 -
Cme01g01052 535 TIGRFAM PPR: pentatricopeptide repeat domain 476 507 IPR002885 -
Cme01g01052 535 TIGRFAM PPR: pentatricopeptide repeat domain 198 230 IPR002885 -
Cme01g01052 535 TIGRFAM PPR: pentatricopeptide repeat domain 336 369 IPR002885 -
Cme01g01052 535 TIGRFAM PPR: pentatricopeptide repeat domain 269 300 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01052 - - - csv:101203470 997.653
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme01g01052 Cme06g02277 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01052 Cme-Chr1:13052236 Cme01g02572 Cme-Chr1:33577268 4.03E-67 dispersed
Cme06g00055 Cme-Chr6:375803 Cme01g01052 Cme-Chr1:13052236 5.43E-34 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g459 . . . . Bpe09g00186 . Bma10g00537 Bma13g01036 Cmo16g00908 . . . . . . . . . . . . . . . Cla10g00525 Cam10g0520 Cec10g0537 Cco10g0527 Clacu10g0542 Cmu10g1368 Cre10g0770 Cone6ag0083 Cone9ag0098 . . Lsi02g01909 Csa03g00532 . Cme06g02277 . Blo10g00812 Bda05g00732 Bda12g00897 . Bpe03g00801 . . Sed07g1928 . . . Cma16g00851 . Car16g00853 . Cpe01g00856 Bhi11g00647 Tan01g1682 Cmetu06g1724 . . Mch10g1229 . . . . . . . . Lsi05g00620 . . Cme01g01052
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005725 1 10 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 3 0 1 1 1 1 1 1 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01052 Cme_Chr01 FPKM 14.87443 16.439198 6.866278 6.212239 3.998969 4.193869 4.460371 9.54001 9.246325 10.796647