Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01054 ATGTTGAGCCTTCTTCACCATCCCAACCTTGTCAATTTGGTTGGGTATTGTGCTGATGCAAATCAAAGGATTTTGGTCTATGAGTTTATGCCTAATGGTTCCTTGGAGGATCATCTATTTGGAACACCTTCAACTAAGCCACCTCTAGACTGGAACACAAGGATGAAGATCGTGGAAGGAGTCGCAAGAGGACTCGAATACTTACACGAAACCGTCAAGCCAGCTCCCGTGATATACCGCGACTTTAAAGCTTCAAATATATTGTTGGATGAGGAATTCAATGCTAAGCTCTCTGATTTTGGTCTTGCAAAGATAGGTCCCATTGGAGATAAATCTCATGTTTCCACCAGAGTCATGGGAACTTATGGTTATTGTGCTCCTGAATATGCTCTTACCGGACAATTATCCACCAAATCCGATGTCTACAGTTTTGGTGTCGTCTTCTTGGAGATAATCACAGGAAGAAGAGTTATTGATACCACGAAGCCAAGTGAACAGAAGAATTTAATTTCTTGGGCACAACCACTTTTTAAAGACAGAAGAAAATTCACACTAATGGCGGATCCAAAGCTAGAAGGAAATTACCCAGTGAAGGCTCTGTATCAAGCTCTAGCAGTGGTAGCCATGTGTTTACAAGACGAACCAAACACTCGGCCATTGATTAGCGATGTGGTTACAGCGCTTCGATATTTAGCTGTGAACAAGGATAGCGATGAAGACGTAGAAGACGAATCAGAGACGGAGTCGGTATCAGGATCGGAATTCAGTTCATACTCATGTTCAACTTCTCCTGATAGAAATTATATTGGAGGTAAAAATGTTGATGTTGAAGGTGATGGGAGTTATGTTACAAAGGTTCTCCATATATTTTATAGTCTGGTTGTGAAGAAGTTGCTGAAGATTGAGACGTGTACGCAGTGGAAGTACGGTTTTGGTTTAGGGGAAGAACCATCCAAAGAAGCTACAGAGTTTGTGGGATTTCAAAATTGA 990 41.52 MLSLLHHPNLVNLVGYCADANQRILVYEFMPNGSLEDHLFGTPSTKPPLDWNTRMKIVEGVARGLEYLHETVKPAPVIYRDFKASNILLDEEFNAKLSDFGLAKIGPIGDKSHVSTRVMGTYGYCAPEYALTGQLSTKSDVYSFGVVFLEIITGRRVIDTTKPSEQKNLISWAQPLFKDRRKFTLMADPKLEGNYPVKALYQALAVVAMCLQDEPNTRPLISDVVTALRYLAVNKDSDEDVEDESETESVSGSEFSSYSCSTSPDRNYIGGKNVDVEGDGSYVTKVLHIFYSLVVKKLLKIETCTQWKYGFGLGEEPSKEATEFVGFQN 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13069714 13072562 - MELO3C013176.2.1 Cme01g01054 318030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01054 329 Gene3D Phosphorylase Kinase; domain 1 1 30 - -
Cme01g01054 329 SUPERFAMILY Protein kinase-like (PK-like) 1 227 IPR011009 -
Cme01g01054 329 MobiDBLite consensus disorder prediction 239 262 - -
Cme01g01054 329 Pfam Protein kinase domain 2 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01054 329 PANTHER OS07G0668900 PROTEIN 1 254 - -
Cme01g01054 329 PANTHER OS07G0668900 PROTEIN 1 254 - -
Cme01g01054 329 Gene3D Transferase(Phosphotransferase) domain 1 31 255 - -
Cme01g01054 329 ProSiteProfiles Protein kinase domain profile. 1 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01054 329 ProSitePatterns Serine/Threonine protein kinases active-site signature. 77 89 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01054 Cme-Chr1:13069714 Cme06g02265 Cme-Chr6:29655336 1.35E-159 dispersed
Cme01g01053 Cme-Chr1:13063818 Cme01g01054 Cme-Chr1:13069714 1.11E-35 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64605 PF00069 Pkinase 3.30E-36 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01054 - - csv:101203232 515.768