Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme01g01064 | ATGGATGATCTCGAAACTCGAAGAATTAGAAACATATGTATATTAGCACACGTCGACCATGGCAAAACGACACTTGCCGACCATCTTATAGCCGCCTCGGGGGGCGGTTTGATCCACCCAAAGATGGCGGGTCGCCTCCGTTTCATGGATTATCTTGATGAGGAACAAAGGCGGGCGATTACCATGAAGAGCTCTTCGATTGGTCTACGGTACAAGGAATACTCTATTAATCTCATTGATTCGCCTGGCCATATGGATTTTTGTAGTGAAGTTTCGACGGCTGCTAGATTGAGTGATGGGGCATTGGTTTTAGTTGATGCTGTGGAGGGCGTGCACATTCAAACCCATGCTGTTTTGCGACAGGCTTGGATTGAGAAGCTTGCGCCATGTTTGGTTCTTAATAAGATTGATAGATTGATATGTGAGTTGAAGTTGAGTCCTATGGAAGCGTATACTCGTTTGTTGAGGATTGTTCATGAAGTTAACGGGATAATGAGTGCATATAAGTCCGAGAAATATTTGTCCGATGTGGATTCAATACTTGCAGGTTCTCCAGGTGAGGTAAATTATGAGAATATCGAGTTTATTGAGGACGATGAGGAAGATACATTTCAACCACAGAAAGGGAATGTGGTGTTTGTATGTGCTTTAGATGGATGGGGTTTTGGCATTAATGAGTTTGCTAAGTTTTATGCTTCAAAGCTTGGGGCCAATGTATCTGCATTGAAGAAGGCCTTGTGGGGTCCGCGATATTTTAATCCGAAGACCAAGATGATCGTCGGAAAGAAGGCCATGGCTGGAGGAAGTAAAGCTCGGCCTATGTTTGTTCAATTTGTGCTTGAGAGACTTTGGGAAGTTTACGGGGCTGCTCTAGAAACTGATGGGAATAAGGAGGTACTTCAGAAGGTTAACAGTACATTTAATTTGAATATACCAGCTCGAGAACTTTCTAACAAAGATCCAAAGGTGGTTCTTCAGGCTATTATGAGTCGTTGGCTTCCTCTTTCAGATGCAATATTGTCCATGGTTGTGAACTGTATGCCTGACCCAATTGCTGCACAATCATTTCGAATATCACGGTTGCTTCCAAAGAGGGATATAATGGATTCCAGCGTTGATGCCAATGTATTAACTGAAGCAGATCTTGTCAAGAGATCCATTGAAGCTTGTAATTCAAGGCCTGAAGCTCCATTTGTTGCTTTTGTGTCCAAGATGTTTGCGGTTCCAGCAAAAATGCTTCCACGGAGTTATGGTGAGACTACTAGTGTTTTTGCTGATGATGGTGGAGATGGTGAATCAGATGAGTGCTTTCTTGCATTTGCAAGGGTATTTAGTGGGGTTCTTTGTTCTGGACAGAGAGTTTTTGTGCTTTCAGCTTTATATGACCCAACGAAAGGGGAATCGATGCACAAGCACATTCAGGAGGCCGAATTGCATTCGTTTTATCTAATGATGGGCCAAGGCTTGAAACCAGTGACCTCAGTAAAAGCAGGAAACCTTGTAGCAATTCGTGGCCTTAGCCATCACATATTAAAAGCTGCAACTCTTTCATCCACAAGAAATTGCTGGCCTTTCTCAAGTATGGCATTCCAGGTTTCTCCTACTCTTAGAGTTGCAGTAGAGCCATCTGATCCTGGAGATATAGGTGCATTGTTGAAAGGCTTAAGGCTTTTAAATCGAGCAGACCCTTTTGTAGAGGTAACTGTTTCAGCAAGGGGAGAACATGTACTTGCTGCAGCTGGAGAAGTTCATCTCGAGAGATGCATAAAGGATTTGAAGGATAGGTTTGCCAGGGTAAGCTTGGAAGTCTCTCCACCTCTCGTATCATATAAAGAGACGATTGAAGGAGAGGCATCTAGTGTGTTGGATTATTTTAAGGTGTTCTCTGAAAGCACAGACTGTGTTACTAAGAAATCCCCAAATGGTAGATGTATTGTCAGAGTGCAGGTACTGAAACTTCCACCTGCTCTTGCCAAAGTACTTGATGAAAATTCTGACGTGTTGGGAGATATTATTGGAGTCAAGTTGGGGCAGAACTATAAAAACTTGGAAACAAAGAGATCAAGTCTGAGGGAAAATGAGAATCCACTGGAAGTAGTAAAAAAACTAATAGCAGATGCAGCATGTAGTGATCTATCTTCAAAGGATGACCATGAAAGCAGTCGGGTTGACAAACACAATGCACTGTGGTCAAAGCTTCTCAAGCGAATTTGGGCACTTGGACCACAGCAGATTGGTCCTAACATTCTAATTTGCCCAGATCCCAAAGTAAAGGATCCTGATTGCTCTTTTCTTATTCGGGGCTCACCTCATGTGTCACAGAGATTGGGTTTTGTGGACGATTCTTTAAATGGTAACTTGGATCCTGAAACGTCTTTGGAAGGTGAGACATCTGCAGCATCACCGGAAGGAACTACAACGCAATGTATGGAAGCAGCATCTCTCGAGAACAGTGTTCTATCTGGGTTTCAGCTTGCTACATCCGCTGGGCCATTATGTGATGAACCTATGTGGGGGTTGGCATTTATTGTTGATGTCTCTATTTCTTCATTATCTGGGAATTCTGAAGAATCTGAATCTCCCTTTCAACCAGAGAACAACGCTATCTTTTCTGGTCAAGTTATGACAACTGTAAAGGATGCCTGTAGAGCAGCTGTGCTTCAAAAGAAACCACGGCTTGTTGAAGCCATGTACTTCTGTGAATTGAATACTCCCACTGAGTATTTGGGTCCAATGTATGCTGTACTCGCACGAAGGCGAGCCCGGGTTTTGAAAGAAGAAATGCAGGAAGGTTCACCTTTGTTTACTGTGCATGCGTATGTGCCCGTGTCAGAAAGCTTTGGTTTTGCAGATGAATTAAGGAGATGGACTTCTGGAGCAGCAAGTGCTCTTCTAGTGCTTAGCCATTGGGAAGAACTATGTGAAGATCCTTTTTTTATCCCCAAAACGGAGGAAGAAATAGAGGAGTTTGGAGATGGTTCTAGCGTGCTTCCCAACACAGCAAGAAAGCTCATTGATACTGTAAGACGGCGTAAGGGTCTTCCAGTGGAAGATAAAGTTGTACAACATGCAACAAAGCAGAGAACTTTGGCTAGGAAAGTATAA | 3105 | 43.19 | MDDLETRRIRNICILAHVDHGKTTLADHLIAASGGGLIHPKMAGRLRFMDYLDEEQRRAITMKSSSIGLRYKEYSINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQAWIEKLAPCLVLNKIDRLICELKLSPMEAYTRLLRIVHEVNGIMSAYKSEKYLSDVDSILAGSPGEVNYENIEFIEDDEEDTFQPQKGNVVFVCALDGWGFGINEFAKFYASKLGANVSALKKALWGPRYFNPKTKMIVGKKAMAGGSKARPMFVQFVLERLWEVYGAALETDGNKEVLQKVNSTFNLNIPARELSNKDPKVVLQAIMSRWLPLSDAILSMVVNCMPDPIAAQSFRISRLLPKRDIMDSSVDANVLTEADLVKRSIEACNSRPEAPFVAFVSKMFAVPAKMLPRSYGETTSVFADDGGDGESDECFLAFARVFSGVLCSGQRVFVLSALYDPTKGESMHKHIQEAELHSFYLMMGQGLKPVTSVKAGNLVAIRGLSHHILKAATLSSTRNCWPFSSMAFQVSPTLRVAVEPSDPGDIGALLKGLRLLNRADPFVEVTVSARGEHVLAAAGEVHLERCIKDLKDRFARVSLEVSPPLVSYKETIEGEASSVLDYFKVFSESTDCVTKKSPNGRCIVRVQVLKLPPALAKVLDENSDVLGDIIGVKLGQNYKNLETKRSSLRENENPLEVVKKLIADAACSDLSSKDDHESSRVDKHNALWSKLLKRIWALGPQQIGPNILICPDPKVKDPDCSFLIRGSPHVSQRLGFVDDSLNGNLDPETSLEGETSAASPEGTTTQCMEAASLENSVLSGFQLATSAGPLCDEPMWGLAFIVDVSISSLSGNSEESESPFQPENNAIFSGQVMTTVKDACRAAVLQKKPRLVEAMYFCELNTPTEYLGPMYAVLARRRARVLKEEMQEGSPLFTVHAYVPVSESFGFADELRRWTSGAASALLVLSHWEELCEDPFFIPKTEEEIEEFGDGSSVLPNTARKLIDTVRRRKGLPVEDKVVQHATKQRTLARKV | 1034 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 13185860 | 13189201 | + | MELO3C013183.2.1 | Cme01g01064 | 318040 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme01g01064 | 1034 | CDD | EF2_snRNP_III | 534 | 605 | - | - | |
Cme01g01064 | 1034 | Gene3D | - | 2 | 206 | IPR027417 | - | |
Cme01g01064 | 1034 | Pfam | Elongation factor G C-terminus | 893 | 976 | IPR000640 | - | |
Cme01g01064 | 1034 | SUPERFAMILY | Ribosomal protein S5 domain 2-like | 608 | 894 | IPR020568 | - | |
Cme01g01064 | 1034 | CDD | aeEF2_snRNP_like_IV | 605 | 899 | - | - | |
Cme01g01064 | 1034 | SUPERFAMILY | Translation proteins | 393 | 528 | IPR009000 | - | |
Cme01g01064 | 1034 | PANTHER | TRANSLATION ELONGATION FACTOR-RELATED | 5 | 1033 | - | - | |
Cme01g01064 | 1034 | SUPERFAMILY | EF-G C-terminal domain-like | 531 | 606 | IPR035647 | - | |
Cme01g01064 | 1034 | Gene3D | Elongation Factor G (Translational Gtpase), domain 3 | 532 | 609 | - | - | |
Cme01g01064 | 1034 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 6 | 348 | IPR027417 | - | |
Cme01g01064 | 1034 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 7 | 239 | IPR000795 | GO:0003924|GO:0005525 | |
Cme01g01064 | 1034 | TIGRFAM | small_GTP: small GTP-binding protein domain | 9 | 138 | IPR005225 | GO:0005525 | |
Cme01g01064 | 1034 | MobiDBLite | consensus disorder prediction | 783 | 805 | - | - | |
Cme01g01064 | 1034 | CDD | EF2_II | 397 | 519 | - | - | |
Cme01g01064 | 1034 | Pfam | Elongation factor Tu GTP binding domain | 8 | 344 | IPR000795 | GO:0003924|GO:0005525 | |
Cme01g01064 | 1034 | CDD | EF2 | 10 | 232 | - | - | |
Cme01g01064 | 1034 | Gene3D | Yeast translation eEF2 (G' domain) | 224 | 333 | - | - | |
Cme01g01064 | 1034 | Gene3D | - | 629 | 889 | IPR014721 | - | |
Cme01g01064 | 1034 | PANTHER | - | 5 | 1033 | - | - | |
Cme01g01064 | 1034 | CDD | eEF2_snRNP_like_C | 895 | 973 | - | - | |
Cme01g01064 | 1034 | Gene3D | - | 891 | 1026 | - | - | |
Cme01g01064 | 1034 | SUPERFAMILY | EF-G C-terminal domain-like | 895 | 993 | IPR035647 | - | |
Cme01g01064 | 1034 | MobiDBLite | consensus disorder prediction | 785 | 805 | - | - | |
Cme01g01064 | 1034 | SMART | EFG_C_a | 892 | 981 | IPR000640 | - | |
Cme01g01064 | 1034 | Gene3D | Translation factors | 350 | 531 | - | - | |
Cme01g01064 | 1034 | PRINTS | GTP-binding elongation factor signature | 11 | 24 | IPR000795 | GO:0003924|GO:0005525 | |
Cme01g01064 | 1034 | PRINTS | GTP-binding elongation factor signature | 57 | 65 | IPR000795 | GO:0003924|GO:0005525 | |
Cme01g01064 | 1034 | PRINTS | GTP-binding elongation factor signature | 77 | 87 | IPR000795 | GO:0003924|GO:0005525 | |
Cme01g01064 | 1034 | PRINTS | GTP-binding elongation factor signature | 93 | 104 | IPR000795 | GO:0003924|GO:0005525 | |
Cme01g01064 | 1034 | PRINTS | GTP-binding elongation factor signature | 129 | 138 | IPR000795 | GO:0003924|GO:0005525 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme01g01064 | Cme-Chr1:13185860 | Cme05g01847 | Cme-Chr5:27274435 | 8.15E-110 | dispersed | |
Cme11g02286 | Cme-Chr11:29925134 | Cme01g01064 | Cme-Chr1:13185860 | 1.28E-18 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme01g01064 | K14536 | - | csv:101220903 | 1944.09 |