Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01064 ATGGATGATCTCGAAACTCGAAGAATTAGAAACATATGTATATTAGCACACGTCGACCATGGCAAAACGACACTTGCCGACCATCTTATAGCCGCCTCGGGGGGCGGTTTGATCCACCCAAAGATGGCGGGTCGCCTCCGTTTCATGGATTATCTTGATGAGGAACAAAGGCGGGCGATTACCATGAAGAGCTCTTCGATTGGTCTACGGTACAAGGAATACTCTATTAATCTCATTGATTCGCCTGGCCATATGGATTTTTGTAGTGAAGTTTCGACGGCTGCTAGATTGAGTGATGGGGCATTGGTTTTAGTTGATGCTGTGGAGGGCGTGCACATTCAAACCCATGCTGTTTTGCGACAGGCTTGGATTGAGAAGCTTGCGCCATGTTTGGTTCTTAATAAGATTGATAGATTGATATGTGAGTTGAAGTTGAGTCCTATGGAAGCGTATACTCGTTTGTTGAGGATTGTTCATGAAGTTAACGGGATAATGAGTGCATATAAGTCCGAGAAATATTTGTCCGATGTGGATTCAATACTTGCAGGTTCTCCAGGTGAGGTAAATTATGAGAATATCGAGTTTATTGAGGACGATGAGGAAGATACATTTCAACCACAGAAAGGGAATGTGGTGTTTGTATGTGCTTTAGATGGATGGGGTTTTGGCATTAATGAGTTTGCTAAGTTTTATGCTTCAAAGCTTGGGGCCAATGTATCTGCATTGAAGAAGGCCTTGTGGGGTCCGCGATATTTTAATCCGAAGACCAAGATGATCGTCGGAAAGAAGGCCATGGCTGGAGGAAGTAAAGCTCGGCCTATGTTTGTTCAATTTGTGCTTGAGAGACTTTGGGAAGTTTACGGGGCTGCTCTAGAAACTGATGGGAATAAGGAGGTACTTCAGAAGGTTAACAGTACATTTAATTTGAATATACCAGCTCGAGAACTTTCTAACAAAGATCCAAAGGTGGTTCTTCAGGCTATTATGAGTCGTTGGCTTCCTCTTTCAGATGCAATATTGTCCATGGTTGTGAACTGTATGCCTGACCCAATTGCTGCACAATCATTTCGAATATCACGGTTGCTTCCAAAGAGGGATATAATGGATTCCAGCGTTGATGCCAATGTATTAACTGAAGCAGATCTTGTCAAGAGATCCATTGAAGCTTGTAATTCAAGGCCTGAAGCTCCATTTGTTGCTTTTGTGTCCAAGATGTTTGCGGTTCCAGCAAAAATGCTTCCACGGAGTTATGGTGAGACTACTAGTGTTTTTGCTGATGATGGTGGAGATGGTGAATCAGATGAGTGCTTTCTTGCATTTGCAAGGGTATTTAGTGGGGTTCTTTGTTCTGGACAGAGAGTTTTTGTGCTTTCAGCTTTATATGACCCAACGAAAGGGGAATCGATGCACAAGCACATTCAGGAGGCCGAATTGCATTCGTTTTATCTAATGATGGGCCAAGGCTTGAAACCAGTGACCTCAGTAAAAGCAGGAAACCTTGTAGCAATTCGTGGCCTTAGCCATCACATATTAAAAGCTGCAACTCTTTCATCCACAAGAAATTGCTGGCCTTTCTCAAGTATGGCATTCCAGGTTTCTCCTACTCTTAGAGTTGCAGTAGAGCCATCTGATCCTGGAGATATAGGTGCATTGTTGAAAGGCTTAAGGCTTTTAAATCGAGCAGACCCTTTTGTAGAGGTAACTGTTTCAGCAAGGGGAGAACATGTACTTGCTGCAGCTGGAGAAGTTCATCTCGAGAGATGCATAAAGGATTTGAAGGATAGGTTTGCCAGGGTAAGCTTGGAAGTCTCTCCACCTCTCGTATCATATAAAGAGACGATTGAAGGAGAGGCATCTAGTGTGTTGGATTATTTTAAGGTGTTCTCTGAAAGCACAGACTGTGTTACTAAGAAATCCCCAAATGGTAGATGTATTGTCAGAGTGCAGGTACTGAAACTTCCACCTGCTCTTGCCAAAGTACTTGATGAAAATTCTGACGTGTTGGGAGATATTATTGGAGTCAAGTTGGGGCAGAACTATAAAAACTTGGAAACAAAGAGATCAAGTCTGAGGGAAAATGAGAATCCACTGGAAGTAGTAAAAAAACTAATAGCAGATGCAGCATGTAGTGATCTATCTTCAAAGGATGACCATGAAAGCAGTCGGGTTGACAAACACAATGCACTGTGGTCAAAGCTTCTCAAGCGAATTTGGGCACTTGGACCACAGCAGATTGGTCCTAACATTCTAATTTGCCCAGATCCCAAAGTAAAGGATCCTGATTGCTCTTTTCTTATTCGGGGCTCACCTCATGTGTCACAGAGATTGGGTTTTGTGGACGATTCTTTAAATGGTAACTTGGATCCTGAAACGTCTTTGGAAGGTGAGACATCTGCAGCATCACCGGAAGGAACTACAACGCAATGTATGGAAGCAGCATCTCTCGAGAACAGTGTTCTATCTGGGTTTCAGCTTGCTACATCCGCTGGGCCATTATGTGATGAACCTATGTGGGGGTTGGCATTTATTGTTGATGTCTCTATTTCTTCATTATCTGGGAATTCTGAAGAATCTGAATCTCCCTTTCAACCAGAGAACAACGCTATCTTTTCTGGTCAAGTTATGACAACTGTAAAGGATGCCTGTAGAGCAGCTGTGCTTCAAAAGAAACCACGGCTTGTTGAAGCCATGTACTTCTGTGAATTGAATACTCCCACTGAGTATTTGGGTCCAATGTATGCTGTACTCGCACGAAGGCGAGCCCGGGTTTTGAAAGAAGAAATGCAGGAAGGTTCACCTTTGTTTACTGTGCATGCGTATGTGCCCGTGTCAGAAAGCTTTGGTTTTGCAGATGAATTAAGGAGATGGACTTCTGGAGCAGCAAGTGCTCTTCTAGTGCTTAGCCATTGGGAAGAACTATGTGAAGATCCTTTTTTTATCCCCAAAACGGAGGAAGAAATAGAGGAGTTTGGAGATGGTTCTAGCGTGCTTCCCAACACAGCAAGAAAGCTCATTGATACTGTAAGACGGCGTAAGGGTCTTCCAGTGGAAGATAAAGTTGTACAACATGCAACAAAGCAGAGAACTTTGGCTAGGAAAGTATAA 3105 43.19 MDDLETRRIRNICILAHVDHGKTTLADHLIAASGGGLIHPKMAGRLRFMDYLDEEQRRAITMKSSSIGLRYKEYSINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQAWIEKLAPCLVLNKIDRLICELKLSPMEAYTRLLRIVHEVNGIMSAYKSEKYLSDVDSILAGSPGEVNYENIEFIEDDEEDTFQPQKGNVVFVCALDGWGFGINEFAKFYASKLGANVSALKKALWGPRYFNPKTKMIVGKKAMAGGSKARPMFVQFVLERLWEVYGAALETDGNKEVLQKVNSTFNLNIPARELSNKDPKVVLQAIMSRWLPLSDAILSMVVNCMPDPIAAQSFRISRLLPKRDIMDSSVDANVLTEADLVKRSIEACNSRPEAPFVAFVSKMFAVPAKMLPRSYGETTSVFADDGGDGESDECFLAFARVFSGVLCSGQRVFVLSALYDPTKGESMHKHIQEAELHSFYLMMGQGLKPVTSVKAGNLVAIRGLSHHILKAATLSSTRNCWPFSSMAFQVSPTLRVAVEPSDPGDIGALLKGLRLLNRADPFVEVTVSARGEHVLAAAGEVHLERCIKDLKDRFARVSLEVSPPLVSYKETIEGEASSVLDYFKVFSESTDCVTKKSPNGRCIVRVQVLKLPPALAKVLDENSDVLGDIIGVKLGQNYKNLETKRSSLRENENPLEVVKKLIADAACSDLSSKDDHESSRVDKHNALWSKLLKRIWALGPQQIGPNILICPDPKVKDPDCSFLIRGSPHVSQRLGFVDDSLNGNLDPETSLEGETSAASPEGTTTQCMEAASLENSVLSGFQLATSAGPLCDEPMWGLAFIVDVSISSLSGNSEESESPFQPENNAIFSGQVMTTVKDACRAAVLQKKPRLVEAMYFCELNTPTEYLGPMYAVLARRRARVLKEEMQEGSPLFTVHAYVPVSESFGFADELRRWTSGAASALLVLSHWEELCEDPFFIPKTEEEIEEFGDGSSVLPNTARKLIDTVRRRKGLPVEDKVVQHATKQRTLARKV 1034
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13185860 13189201 + MELO3C013183.2.1 Cme01g01064 318040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01064 1034 CDD EF2_snRNP_III 534 605 - -
Cme01g01064 1034 Gene3D - 2 206 IPR027417 -
Cme01g01064 1034 Pfam Elongation factor G C-terminus 893 976 IPR000640 -
Cme01g01064 1034 SUPERFAMILY Ribosomal protein S5 domain 2-like 608 894 IPR020568 -
Cme01g01064 1034 CDD aeEF2_snRNP_like_IV 605 899 - -
Cme01g01064 1034 SUPERFAMILY Translation proteins 393 528 IPR009000 -
Cme01g01064 1034 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 5 1033 - -
Cme01g01064 1034 SUPERFAMILY EF-G C-terminal domain-like 531 606 IPR035647 -
Cme01g01064 1034 Gene3D Elongation Factor G (Translational Gtpase), domain 3 532 609 - -
Cme01g01064 1034 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 348 IPR027417 -
Cme01g01064 1034 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 7 239 IPR000795 GO:0003924|GO:0005525
Cme01g01064 1034 TIGRFAM small_GTP: small GTP-binding protein domain 9 138 IPR005225 GO:0005525
Cme01g01064 1034 MobiDBLite consensus disorder prediction 783 805 - -
Cme01g01064 1034 CDD EF2_II 397 519 - -
Cme01g01064 1034 Pfam Elongation factor Tu GTP binding domain 8 344 IPR000795 GO:0003924|GO:0005525
Cme01g01064 1034 CDD EF2 10 232 - -
Cme01g01064 1034 Gene3D Yeast translation eEF2 (G' domain) 224 333 - -
Cme01g01064 1034 Gene3D - 629 889 IPR014721 -
Cme01g01064 1034 PANTHER - 5 1033 - -
Cme01g01064 1034 CDD eEF2_snRNP_like_C 895 973 - -
Cme01g01064 1034 Gene3D - 891 1026 - -
Cme01g01064 1034 SUPERFAMILY EF-G C-terminal domain-like 895 993 IPR035647 -
Cme01g01064 1034 MobiDBLite consensus disorder prediction 785 805 - -
Cme01g01064 1034 SMART EFG_C_a 892 981 IPR000640 -
Cme01g01064 1034 Gene3D Translation factors 350 531 - -
Cme01g01064 1034 PRINTS GTP-binding elongation factor signature 11 24 IPR000795 GO:0003924|GO:0005525
Cme01g01064 1034 PRINTS GTP-binding elongation factor signature 57 65 IPR000795 GO:0003924|GO:0005525
Cme01g01064 1034 PRINTS GTP-binding elongation factor signature 77 87 IPR000795 GO:0003924|GO:0005525
Cme01g01064 1034 PRINTS GTP-binding elongation factor signature 93 104 IPR000795 GO:0003924|GO:0005525
Cme01g01064 1034 PRINTS GTP-binding elongation factor signature 129 138 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01064 Cme-Chr1:13185860 Cme05g01847 Cme-Chr5:27274435 8.15E-110 dispersed
Cme11g02286 Cme-Chr11:29925134 Cme01g01064 Cme-Chr1:13185860 1.28E-18 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01064 K14536 - csv:101220903 1944.09