Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01080 ATGTTTTCAAGAACAATGCCTACAATTCTGAGGAATCCCTTTCTTCCTCCTCATTTCTTCTTCACCATAGCCTTGATTTTATGTGTAAAATCCCTTCTCTTTTCTTCTTCTTACTCCATTGATGAGCAGGGTAGAGTTCTTCTTGAATGGAAGAAGAATCTAACAAGCCCCAGAGATGTGTTAAGATCATGGAATCCGAAGGCGGCGACGCCATGTTCATGGTTTGGAGTTGTGTGCAACTCCAATGGACAGGTGGTGGAGATAATCCTGATATCACTGGAATTGCTAGGTACATTGCCTACAAATTTTCAAGCTCTCAAGTTCTTGGGGACTCTTGTGATCTCTGACACGAATATTACGGGAAGCATTCCGAAAGAGTTTGGAGATTATATGGAGCTGAATGTTCTTGATCTAAGCAGAAATTTCCTCAAGGGAAGAATCCCAGAAGATCTTTGCAAGCTGAGCAAGCTTCAGGATTTGATTCTTCATAACAATGAGTTTGAAAACATACCTACGACGATTGGAAATCTTACAAGCCTTGTGAATTTCCAAATCACAGACAATAGTATAAATGGGGAGATTCCTAAAAGCATCGGAATGTTGAAGAATCTTATGGTTTTCAAAGCTGGAGGGAATTTATATCTAGAGGGTTTGTTGCCAGATGAGATTGGAAACTGCAGCAGTTTAACAATGTTAGGATTATCCGACACTGGAATCTATGGTGCTCTTCCTCCAACAATTGGGATGCTGCAAAAGATTCAGACCATACACATGTATAGATCAAAACTTTTTGAATCACTCCCAGAAGAGATTACAAACTGTAGTGAATTACAAACTCTTAGACTGTATCAAAATGGTATTTCTGGAAGGATACCACGAGGAATCGGGAAGATGAAAAAGCTTAGAATCCTTCTTCTATGGTTGAACTTGATGGATGGTGACATTCCAGAAGGAATTGGAAACTGCGACGAACTGGTACTACTTGATCTTTCAGAAAATTCTCTAACAGGACCTATCCCTAAAAGTTTAGGACGACTTAAGAACCTTGCAGACATTCAACTGAGTGTTAATCAGCTTAATGGTACAATACCACCCGAAATTTTTAATATTACGACTTTGATTCATGTGGAAATAGACAACAATAGATTATGGGGGGAGATACCAACTAATGTAGGAAACCTGAAGAACCTTCGTACATTTTTACTATGGGGGAACAACTTGACAGGCACTATTCCCCCCAGTCTCCCAGACTGCCGAAATATCATCTTGCTTGATTTATCTCTCAACCAGTTAATAGGTCCAATACCGACAGGGATTTTCGCTATGAAAGGACTCTCCAAACTTCTTCTCTTATCAAATAATCTATCCGGGATCATCCCTCCTGAAATTGGAAACTGTACCACATTAACCAGACTCAGACTGTCTATGAATAAGCTTGGAGGTATTATCCCTTCAGAGATGGGAAATCTCAAGAACTTAGAACATCTTGACATGGGTGAAAACCTTTTGGTTGGAGGAATTCCTTCGACCTTTTCCAAATTGGAAAAACTTGAGTCTCTTGACCTACGTACAAATAAGCTCACTAGTCTCCCAAAAATTCTGCCAAAGAACCTAGTGCTTCTTAATGTATCCAACAACATGATTAAAGGTCAGATCAAACCCAACATTGGAGAATTGTTGAAATTAACTAAACTAGACCTAAAAAACAATCGGTTTTATGGGAAGATCCCTGAAGAAATAACATACTGTGAGAAAATCCAATATTTAGACCTCAGCAATAATTTCTTCTCTGGGGAAGTCCCTAAGCAATTAGGAACATTTGCTTCACTTGACATTGCTCTTAATCTAAGTTACAATCAATTCTCAGGACAAATCCCAAATGAATTGTCTGGTCTTACCAAGCTAAGTGTTCTAGACCTCTCCCACAACAACTTCTCAGGAGAACTTGGCTTTCTATCGGAGCTTGAAAACCTTGTCACTTTAAACATCTCCTACAACAACTTCTCTGGAAAATTGCCCGACACACCCTTCTTTCAAAAGCTCCCTGAAAGCTCTATTTTCGGAAACCAAGACCTCATCATTGTTTCAAACGGAGGACCTAATCCTAAAGAAAATGGGGGATTCAGCAGCATAAGCAAAGAAGCAATACAAATAGCCTTGCCTATCTTGATCAGCATAAGTGCAGTGTTGTTCTTTTTAGGATTCTACATGCTAATTCGAACCCACATGGCCCATTTCATTCTTTTCACAGAAGGAAACAAATGGGAAATAACCCTGTTTCAAAAGCTCGATTTCTCAATTGACCACATCATAAGAAACTTAACCGCATCCAACGTTATCGGCACCGGAAGCTCCGGTGCCGTCTATAGAATCACAACCCCAAATGGGGAAACAATGGCAGTGAAGAAAATGTGGTCCACTGAAGAAACTGGAGCCTTCAGCACTGAAATCGAAATTTTGGGATCAATTCGACACAAGAACATAATCAGACTACTAGGTTGGGGATCTAACAGGAATTTGAAAATCTTGTTTTATGATTATCTTCCAAATGGAAACTTGAGCTCCCTTATCAATGTCTCTGAAATAGGAGGAGCAGAATGGGAGGTAAGATACGAAGTCCTTCTAGGAGTGGCTCATGCTCTAGCATATCTTCACCATGACTGTATTCCACCAATCTTACATGGTGATGTGAAAACCATGAATATCCTACTCGGCCATGACTTTGAACCATATCTAGCCGATTTTGGGATAGCCAAAATCGTGAGTACAAAAAGTGGTAACGATAGTTTAGAGACGCCATTGACAAGACCTCAACTTGCAGGCTCTTTTGGCTACATGGCCCCTGAACAAGGGTCCACGATTAAAATCACAGAGAAGAGCGATGTTTATAGCTTCGGTGTGGTGATAATGGAGGTTCTAACAGGGCGGCATCCACTGGACCCAACTTTACCAGGAGGAGTTAATTTGGTGCAATGGGTTCAAGACCATTTTGCCGCACACCAAAACAAAGCGGACATTTTCGATTTAAAGCTCAGAGGAAGAACGGATCCGACAATCCACGAAATGATTCAAACCCTAGCCGTGGCATTAGTTTGTGCCAATGTCAAGGCTGATGATCGACCCTCTATGAAAGATGTTGTGGCCATGCTGGAGGAAATTCGACATTCCGAATTGGGAAGAGCTGCTACCGAAACCGATGAGTCTAAGCCGGAAATGGCGATTGTGGTTCAATCGCCATTGTGA 3243 40.86 MFSRTMPTILRNPFLPPHFFFTIALILCVKSLLFSSSYSIDEQGRVLLEWKKNLTSPRDVLRSWNPKAATPCSWFGVVCNSNGQVVEIILISLELLGTLPTNFQALKFLGTLVISDTNITGSIPKEFGDYMELNVLDLSRNFLKGRIPEDLCKLSKLQDLILHNNEFENIPTTIGNLTSLVNFQITDNSINGEIPKSIGMLKNLMVFKAGGNLYLEGLLPDEIGNCSSLTMLGLSDTGIYGALPPTIGMLQKIQTIHMYRSKLFESLPEEITNCSELQTLRLYQNGISGRIPRGIGKMKKLRILLLWLNLMDGDIPEGIGNCDELVLLDLSENSLTGPIPKSLGRLKNLADIQLSVNQLNGTIPPEIFNITTLIHVEIDNNRLWGEIPTNVGNLKNLRTFLLWGNNLTGTIPPSLPDCRNIILLDLSLNQLIGPIPTGIFAMKGLSKLLLLSNNLSGIIPPEIGNCTTLTRLRLSMNKLGGIIPSEMGNLKNLEHLDMGENLLVGGIPSTFSKLEKLESLDLRTNKLTSLPKILPKNLVLLNVSNNMIKGQIKPNIGELLKLTKLDLKNNRFYGKIPEEITYCEKIQYLDLSNNFFSGEVPKQLGTFASLDIALNLSYNQFSGQIPNELSGLTKLSVLDLSHNNFSGELGFLSELENLVTLNISYNNFSGKLPDTPFFQKLPESSIFGNQDLIIVSNGGPNPKENGGFSSISKEAIQIALPILISISAVLFFLGFYMLIRTHMAHFILFTEGNKWEITLFQKLDFSIDHIIRNLTASNVIGTGSSGAVYRITTPNGETMAVKKMWSTEETGAFSTEIEILGSIRHKNIIRLLGWGSNRNLKILFYDYLPNGNLSSLINVSEIGGAEWEVRYEVLLGVAHALAYLHHDCIPPILHGDVKTMNILLGHDFEPYLADFGIAKIVSTKSGNDSLETPLTRPQLAGSFGYMAPEQGSTIKITEKSDVYSFGVVIMEVLTGRHPLDPTLPGGVNLVQWVQDHFAAHQNKADIFDLKLRGRTDPTIHEMIQTLAVALVCANVKADDRPSMKDVVAMLEEIRHSELGRAATETDESKPEMAIVVQSPL 1080
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13500665 13504726 + MELO3C013195.2.1 Cme01g01080 318056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01080 1080 SUPERFAMILY RNI-like 328 673 - -
Cme01g01080 1080 ProSiteProfiles Leucine-rich repeat profile. 516 537 IPR001611 GO:0005515
Cme01g01080 1080 Gene3D Phosphorylase Kinase; domain 1 753 847 - -
Cme01g01080 1080 Gene3D Transferase(Phosphotransferase) domain 1 848 1076 - -
Cme01g01080 1080 ProSiteProfiles Leucine-rich repeat profile. 634 656 IPR001611 GO:0005515
Cme01g01080 1080 Pfam Protein kinase domain 777 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01080 1080 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 18 1062 - -
Cme01g01080 1080 SUPERFAMILY L domain-like 65 406 - -
Cme01g01080 1080 Gene3D Ribonuclease Inhibitor 347 443 IPR032675 -
Cme01g01080 1080 Gene3D Ribonuclease Inhibitor 242 346 IPR032675 -
Cme01g01080 1080 ProSitePatterns Protein kinases ATP-binding region signature. 780 803 IPR017441 GO:0005524
Cme01g01080 1080 SUPERFAMILY Protein kinase-like (PK-like) 765 1052 IPR011009 -
Cme01g01080 1080 ProSiteProfiles Protein kinase domain profile. 774 1058 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01080 1080 Pfam Leucine rich repeat N-terminal domain 41 80 IPR013210 -
Cme01g01080 1080 SMART serkin_6 774 1050 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01080 1080 ProSitePatterns Serine/Threonine protein kinases active-site signature. 892 904 IPR008271 GO:0004672|GO:0006468
Cme01g01080 1080 Pfam Leucine rich repeat 468 527 IPR001611 GO:0005515
Cme01g01080 1080 Gene3D Ribonuclease Inhibitor 151 241 IPR032675 -
Cme01g01080 1080 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE 18 1062 - -
Cme01g01080 1080 MobiDBLite consensus disorder prediction 1060 1080 - -
Cme01g01080 1080 SMART LRR_typ_2 346 370 IPR003591 -
Cme01g01080 1080 SMART LRR_typ_2 394 418 IPR003591 -
Cme01g01080 1080 SMART LRR_typ_2 514 537 IPR003591 -
Cme01g01080 1080 SMART LRR_typ_2 559 583 IPR003591 -
Cme01g01080 1080 SMART LRR_typ_2 154 177 IPR003591 -
Cme01g01080 1080 SMART LRR_typ_2 632 655 IPR003591 -
Cme01g01080 1080 SMART LRR_typ_2 490 513 IPR003591 -
Cme01g01080 1080 Gene3D Ribonuclease Inhibitor 444 702 IPR032675 -
Cme01g01080 1080 Gene3D Ribonuclease Inhibitor 42 150 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01080 Cme-Chr1:13500665 Cme12g01675 Cme-Chr12:23718919 0 dispersed
Cme01g01080 Cme-Chr1:13500665 Cme02g01993 Cme-Chr2:26187599 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64606 PF00069 Pkinase 1.30E-36 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01080 - - csv:101221377 1946.4