Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01088 ATGGGCTCTGCTTCAGTTGTTGATTTAATAGAAGCCTCCTCTGGCGTGCATTTTTCTGGGCGTCTTCTGGATAGAAAGCAACAAAATGGACATACAAGGAGCTTGACCTCAGAAACTGAAAATTTTTACAAACAACCTTTCGTCATTGGGGTTGCTGGTGGTGCGGCCTCTGGAAAGACAACAGTTTGTGATATGATCATTCATCAACTTCATGACCAGCGAGTCGTTCTTGTTAACCAGGATTCTTTCTATCATAATTTAACTTCCGAGGAACTTATGCAAGTACATGAATACAACTTTGATCATCCCGATGCATTTGACACAGAGGAACTTTTAAGTTCAATGGATAAATTGAGGCATGGGGAGCCTGTAGATATTCCAAAATATGACTTCAAGAGTTATAAAAATAACGTGTTTCCACCAAGAAGGGTTAACCCTTCCGATGTTATCATTTTGGAAGGCATTCTTGTTTTCCATGACCCTCGCGTTCGAGAACTGATGAATATGAAGATATTTGTTGATACAGATGCTGATGTTCGTTTGGCGAGAAGGATAAGGCGTGATACTGTGGAGAAGGCTAGAGACATAGCTGCAGTACTTGATCAGTATTCAAAATTTGTGAAGCCTGCTTTTGATGACTTCATACTTCCTACAAAGAAGTATGCTGATATCATCATTCCCAGAGGAGGCGATAATCACGTAGCCATTGATTTAATTGTACAACATATTCGCACAAAGCTTGGTCAGCACGATCTTTGTAAAATATACCCTAATTTATATGTTATCCAGTCAACCTTTCAGATACGAGGCATGCATACATTGATACGTGATGCTAAAACTACAAAGCATGATTTTGTGTTCTATGCTGACCGATTGATTCGGCTGGTTGTTGAGCATGGTCTGGGACATTTACCATTCACTGAAAAGCAGGTGACCACTCCAACTGGATCTGTATATAGTGGTGTTGATTTCTGCAAGAGGTTATGTGGTGTCTCTGTCATCAGGAGTGGCGAGAGTATGGAAAATGCTCTACGGGCATGTTGTAAAGGCATTAAAATTGGAAAGATTCTCATTCATAGGGAAGGTGACAATGGCCAACAGTTAATTTATGAAAAACTACCCTCGGATATCTCCAATAGGCATGTTTTACTATTGGATCCCATCCTAGGCACAGGAAACTCGGCAGTGCAAGCCATTTCTTTGCTCATAAGTAAGGGTGTTCCAGAGCCTAATATTATCTTTCTCAATCTCATATCAGCACCTCAAGGCGTACATGTGGTGTGCAAACGTTTTCCAAGAATAAAGATTGTGACATCTGAAATTGAGATCGGTTTGAATCAAGATTTTCGAGTGGTGCCTGGTATGGGTGAGTTTGGGGACCGGTATTTTGGAACCGACGATGAGGAACAAGTGAGGCCTCTCCACAATAGTTGTTCTTTCAAGTAA 1446 40.94 MGSASVVDLIEASSGVHFSGRLLDRKQQNGHTRSLTSETENFYKQPFVIGVAGGAASGKTTVCDMIIHQLHDQRVVLVNQDSFYHNLTSEELMQVHEYNFDHPDAFDTEELLSSMDKLRHGEPVDIPKYDFKSYKNNVFPPRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIRRDTVEKARDIAAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDAKTTKHDFVFYADRLIRLVVEHGLGHLPFTEKQVTTPTGSVYSGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPSDISNRHVLLLDPILGTGNSAVQAISLLISKGVPEPNIIFLNLISAPQGVHVVCKRFPRIKIVTSEIEIGLNQDFRVVPGMGEFGDRYFGTDDEEQVRPLHNSCSFK 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13685454 13693262 + MELO3C013202.2.1 Cme01g01088 318064

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01088 481 Pfam Uracil phosphoribosyltransferase 264 465 - -
Cme01g01088 481 PANTHER URIDINE KINASE 26 467 - -
Cme01g01088 481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 239 IPR027417 -
Cme01g01088 481 SUPERFAMILY PRTase-like 249 466 IPR029057 -
Cme01g01088 481 TIGRFAM udk: uridine kinase 45 246 IPR000764 -
Cme01g01088 481 Pfam Phosphoribulokinase / Uridine kinase family 48 234 IPR006083 GO:0005524|GO:0016301
Cme01g01088 481 PRINTS Uridine kinase signature 46 63 - -
Cme01g01088 481 PRINTS Uridine kinase signature 76 87 - -
Cme01g01088 481 PRINTS Uridine kinase signature 121 136 - -
Cme01g01088 481 PRINTS Uridine kinase signature 178 188 - -
Cme01g01088 481 PRINTS Uridine kinase signature 192 203 - -
Cme01g01088 481 PRINTS Uridine kinase signature 214 227 - -
Cme01g01088 481 Gene3D - 250 465 IPR029057 -
Cme01g01088 481 PANTHER URIDINE KINASE-LIKE PROTEIN 3 26 467 - -
Cme01g01088 481 CDD UMPK 48 246 IPR000764 -
Cme01g01088 481 Gene3D - 43 249 IPR027417 -
Cme01g01088 481 CDD PRTases_typeI 323 438 IPR000836 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01088 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - csv:101219714 954.125
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01088 Cme-Chr1:13685454 Cme06g01664 Cme-Chr6:18167668 0 dispersed
Cme01g01088 Cme-Chr1:13685454 Cme10g00321 Cme-Chr10:2103810 5.56E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g781 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1241 Cone15ag1266 . Csa07g01059 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme01g01088
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g01606 . 33 189 PRT Gene Family AT1G80050 79.0 1.9e-66 248.8
Cme06g02603 . 32 167 PRT Gene Family AT1G80050 78.7 4.2e-58 221.1
Cme03g02097 . 108 257 PRT Gene Family AT1G80050 70.7 6.6e-56 213.8
Cme09g01640 . 30 210 PRT Gene Family AT1G80050 54.5 1.9e-47 185.7
Cme03g01606 . 1 148 PRT Gene Family AT5G11160 79.7 7.6e-63 236.9
Cme03g02097 . 84 223 PRT Gene Family AT5G11160 73.6 2.6e-55 211.8
Cme06g02603 . 10 147 PRT Gene Family AT5G11160 72.5 1.9e-53 205.7
Cme09g01640 . 8 164 PRT Gene Family AT5G11160 55.7 2.0e-42 169.1
Cme03g02097 . 79 260 PRT Gene Family AT1G27450 81.9 1.2e-80 296.2
Cme06g02603 . 6 167 PRT Gene Family AT1G27450 77.8 7.8e-69 256.9
Cme03g01606 . 11 183 PRT Gene Family AT1G27450 68.8 3.6e-66 248.1
Cme09g01640 . 7 210 PRT Gene Family AT1G27450 55.1 4.0e-57 218.0
Cme11g00452 . 110 594 PRT Gene Family AT2G16570 85.0 5.3e-241 830.5
Cme11g00452 . 109 594 PRT Gene Family AT4G34740 85.4 1.1e-241 832.8
Cme11g00452 . 114 567 PRT Gene Family AT4G38880 75.4 3.4e-197 684.9
Cme03g02097 . 79 260 PRT Gene Family AT1G27450 81.9 1.2e-80 296.2
Cme06g02603 . 6 167 PRT Gene Family AT1G27450 77.8 7.8e-69 256.9
Cme03g01606 . 11 183 PRT Gene Family AT1G27450 68.8 3.6e-66 248.1
Cme09g01640 . 7 210 PRT Gene Family AT1G27450 55.1 4.0e-57 218.0
Cme03g01606 . 33 189 PRT Gene Family AT1G80050 79.0 1.9e-66 248.8
Cme06g02603 . 32 167 PRT Gene Family AT1G80050 78.7 4.2e-58 221.1
Cme03g02097 . 108 257 PRT Gene Family AT1G80050 70.7 6.6e-56 213.8
Cme09g01640 . 30 210 PRT Gene Family AT1G80050 54.5 1.9e-47 185.7
Cme06g02603 . 6 99 PRT Gene Family AT4G22570 88.3 1.7e-44 175.3
Cme03g02097 . 83 175 PRT Gene Family AT4G22570 80.6 1.7e-39 158.7
Cme03g01606 . 11 100 PRT Gene Family AT4G22570 77.8 4.5e-37 150.6
Cme09g01640 . 6 124 PRT Gene Family AT4G22570 63.9 4.5e-37 150.6
Cme06g02603 . 7 98 PRT Gene Family AT4G12440 88.0 2.1e-41 164.9
Cme03g02097 . 79 174 PRT Gene Family AT4G12440 79.2 3.8e-38 154.1
Cme03g01606 . 1 148 PRT Gene Family AT5G11160 79.7 7.6e-63 236.9
Cme03g02097 . 84 223 PRT Gene Family AT5G11160 73.6 2.6e-55 211.8
Cme06g02603 . 10 147 PRT Gene Family AT5G11160 72.5 1.9e-53 205.7
Cme09g01640 . 8 164 PRT Gene Family AT5G11160 55.7 2.0e-42 169.1
Cme03g01066 . 20 205 PRT Gene Family AT1G71750 62.9 4.6e-67 251.1
Cme01g01088 . 16 468 PRT Gene Family AT1G55810 85.7 1.9e-225 778.5
Cme06g01664 . 19 482 PRT Gene Family AT1G55810 73.5 1.0e-199 693.0
Cme01g01088 . 65 467 PRT Gene Family AT3G27440 77.2 1.5e-184 642.5
Cme06g01664 . 80 482 PRT Gene Family AT3G27440 75.2 2.5e-179 625.2
Cme06g01664 . 1 482 PRT Gene Family AT3G27190 86.1 2.5e-247 851.3
Cme01g01088 . 3 467 PRT Gene Family AT3G27190 74.1 2.5e-207 718.4
Cme08g02442 . 7 229 PRT Gene Family AT3G53900 77.6 2.7e-103 372.1
Cme01g01088 . 1 468 PRT Gene Family AT4G26510 83.8 2.2e-232 801.6
Cme06g01664 . 11 482 PRT Gene Family AT4G26510 75.2 3.4e-209 724.5
Cme06g01664 . 1 482 PRT Gene Family AT5G40870 86.3 2.7e-246 847.8
Cme01g01088 . 44 470 PRT Gene Family AT5G40870 80.1 5.6e-207 717.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01088 Cme_Chr01 FPKM 7.902699 6.926854 9.692546 10.346391 17.451324 13.612409 15.867468 11.508298 11.748775 11.891023