Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01105 ATGACCTTCAGTTCTTCGAATGACCAATATTGTTACCACATCCACATCCATGCAGAAATAATAGACAAACAGCTTAAAAACAACGACTTTATTTGGCAAATTGAAGTTCCATTAACCGGAAAGTTCATCATTGACGTAGAATTCCTTGATTTGAAGATTGCATCATCAGAGGGTGGGGAACCTTCCTCTATCTGGGCGGATGGATCGACACGACAACGATCAAATTCAAGAGCTCTTATTTCATTGGGTCGAATGTTGAAGGAAAGCATCCACACTGATATCATAATTAATGCTTCTGATGGAAGTGTTGGAGCCCATCGTGCTATTCTTGCTTCACGGTCACCTGTTTTCCACAGCATGTTTTCACATGACCTGAAAGAAAAGGAACTATCTACGTTAAACATCTCTGATATGTCTTTTGAAGCTTGTCAGGCTTTTCTTAATTACATGTATGGTAATATCCAACATGAAGAGTTTCTAGCCCATAGACTGGCACTTCTTCATGCAGCTGAGAAATATGACATAGATGACCTAAAAGAAGCCTGCCACGATAGTCTGCTAGAAGATATTGATGCCAAGAATGTTCTTGAAAGACTACAGAATGCATCTCTTTATCAATTGCCAAAACTGAAGACCAGCTGCATGCAGTATCTCGTGAAGTTTGGTAAGATACTCGACATCCGAGATGAATTCAATATCTTTCTGCAAAATGCAGACAGGGATCTAATAGCTGAAATCTTCCATGAAATTCTTAATGCTTGGAAAGGTTTCTAG 774 39.28 MTFSSSNDQYCYHIHIHAEIIDKQLKNNDFIWQIEVPLTGKFIIDVEFLDLKIASSEGGEPSSIWADGSTRQRSNSRALISLGRMLKESIHTDIIINASDGSVGAHRAILASRSPVFHSMFSHDLKEKELSTLNISDMSFEACQAFLNYMYGNIQHEEFLAHRLALLHAAEKYDIDDLKEACHDSLLEDIDAKNVLERLQNASLYQLPKLKTSCMQYLVKFGKILDIRDEFNIFLQNADRDLIAEIFHEILNAWKGF 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13913339 13915808 + MELO3C013212.2.1 Cme01g01105 318081

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01105 257 ProSiteProfiles BTB domain profile. 92 151 IPR000210 GO:0005515
Cme01g01105 257 SUPERFAMILY POZ domain 77 188 IPR011333 -
Cme01g01105 257 CDD BTB_POZ_ZBTB_KLHL-like 91 173 - -
Cme01g01105 257 Pfam BTB/POZ domain 85 188 IPR000210 GO:0005515
Cme01g01105 257 Gene3D Potassium Channel Kv1.1; Chain A 67 220 IPR011333 -
Cme01g01105 257 PANTHER OS08G0495500 PROTEIN 15 257 - -
Cme01g01105 257 PANTHER OS08G0495500 PROTEIN-RELATED 15 257 IPR044714 -
Cme01g01105 257 SMART BTB_4 92 190 IPR000210 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01105 K10523 SPOP; speckle-type POZ protein - csv:101218769 459.529
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01105 Cme-Chr1:13913339 Cme03g00549 Cme-Chr3:8411937 8.22E-84 dispersed
Cme01g01105 Cme-Chr1:13913339 Cme11g01944 Cme-Chr11:27501679 4.87E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g755 . . Bda07g00429 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa07g01050 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01024 Cme01g01105
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007616 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40738 PF00651 BTB 1.50E-22 CL0033 Cme TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01105 Cme_Chr01 FPKM 12.138832 11.917802 12.240027 11.417441 16.204115 17.556242 16.381733 16.149574 14.408072 14.7955