Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01107 ATGAGAATCACTGTGATGACAGCCGACGAACAGATTCTTTCCTTGGATGTTGATCCCAATGAATCTGTTGAGAACGTGAAGGCTTTGCTTGAGGTTGAGACTCAAGTACCGCTTCAGCGGCAGCAGCTGCTGTACAATGGGAAGGAGATGAAAAATTTTGAAAAATTGAGTGGCTTGGGTGTTAAAGACGAAGATTTGATTATGATGGTATCAGCTGGCGCTTCTAGTGCTCCTACCAATAATTTGAGCTTCAATCCAGATGGTTCTGCAGTGAACCCTGAAGCCTTCCAGCAACACATTAGACGTGACTCAAATACAATGGCTCAACTTTTTCAGAGTGATCCTGAATTGGCACAAGCTATTGTTGGAAACGACCTGAACAATCTGCAACAGATTTTAAGAGAGCGTCATCGTCAAAGATCTGTATTACAGCGTCAACAAGAAGAGGAGATGGCCCTTCTGTATGCAGATCCTTTTGATGTTGAGGCCCAAAAGAAGATCGAAGCTGCTATTCGCCAGAAAGGAATTGACGAAAATTGGGCTGCAGCTCTTGAACACAATCCCGAAGCTTTTGCAAGGGTGGTCATGTTATATGTTGACATGGAAGTTAATGGTGTCCCATTAAAGGCATTTGTTGATAGCGGAGCTCAATCAACAATTATATCAAAAAGCTGTGCTGAGAAATGTGGATTGTTGAGGCTTTTAGATCAACGCTACAAGGGCATTGCTCGTGGAGTAGGCCAATCAGAGATCTTAGGTCGAATCCATGTAGCTCCAATCAAGATTGGTAGTATATTCTACCCCTGCTCGTTTCTGGTACTGGATTCCCCAAATATGGACTTCCTATTTGGTCTGGATATGCTACGGAAACACCAGGAGAATGTTTTGAGAGTGGGTGGAGGAGAGGTCTCTGTACCCTTTTTGCAAGAGAAAGACATTCCCCCTTCTCTTTTTGATGAGGAAAGGCTCTCAAAGGAAGCCTCTAGCTCTGGAGCGCCAGTGGCTTCATCCCCAACAGAGAACAGCAGAAATGCAACAGCTGCCCGAGCTACAGCAGGAAATGTTGGGGGAGCAGCCCAGGGTCCGGAATTTGAAGCCAAAGTAGCAAAGCTAGTTGAATTGGGATTCCAAAGAGAGGCAGTAATACAAGCTCTCAAACTATTTGATGGAAATGAAGAACAGGCAGCTGGGTTTCTTTTTGGATGA 1206 44.69 MRITVMTADEQILSLDVDPNESVENVKALLEVETQVPLQRQQLLYNGKEMKNFEKLSGLGVKDEDLIMMVSAGASSAPTNNLSFNPDGSAVNPEAFQQHIRRDSNTMAQLFQSDPELAQAIVGNDLNNLQQILRERHRQRSVLQRQQEEEMALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAEKCGLLRLLDQRYKGIARGVGQSEILGRIHVAPIKIGSIFYPCSFLVLDSPNMDFLFGLDMLRKHQENVLRVGGGEVSVPFLQEKDIPPSLFDEERLSKEASSSGAPVASSPTENSRNATAARATAGNVGGAAQGPEFEAKVAKLVELGFQREAVIQALKLFDGNEEQAAGFLFG 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13928582 13950292 - MELO3C013214.2.1 Cme01g01107 318083

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01107 401 Pfam Aspartyl protease 174 293 IPR019103 GO:0004190|GO:0006508
Cme01g01107 401 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Cme01g01107 401 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 362 401 IPR015940 -
Cme01g01107 401 SUPERFAMILY Acid proteases 182 292 IPR021109 -
Cme01g01107 401 MobiDBLite consensus disorder prediction 322 356 - -
Cme01g01107 401 CDD RP_DDI 181 298 IPR019103 GO:0004190|GO:0006508
Cme01g01107 401 SUPERFAMILY Ubiquitin-like 1 81 IPR029071 -
Cme01g01107 401 MobiDBLite consensus disorder prediction 329 349 - -
Cme01g01107 401 SMART ubq_7 1 72 IPR000626 GO:0005515
Cme01g01107 401 Gene3D - 334 401 - -
Cme01g01107 401 ProSiteProfiles Ubiquitin domain profile. 1 70 IPR000626 GO:0005515
Cme01g01107 401 SUPERFAMILY UBA-like 359 401 IPR009060 GO:0005515
Cme01g01107 401 SMART uba_6 364 401 IPR015940 -
Cme01g01107 401 PANTHER AT13091P 1 400 - -
Cme01g01107 401 Gene3D Acid Proteases 175 315 IPR021109 -
Cme01g01107 401 CDD UBA_scDdi1_like 365 400 - -
Cme01g01107 401 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Cme01g01107 401 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 400 - -
Cme01g01107 401 Pfam UBA/TS-N domain 365 398 IPR015940 -
Cme01g01107 401 Coils Coil 129 149 - -
Cme01g01107 401 Gene3D - 1 85 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01107 K11885 DDI1; DNA damage-inducible protein 1 - csv:101218534 751.125
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g751 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag1285 . Csa07g01048 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01025 Cme01g01107
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005655 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01107 Cme_Chr01 FPKM 0.0414 0.027411 0.0 0.00701 0.050956 0.072218 0.091228 0.183126 0.159585 0.078072