Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01114 ATGCCTGTGCTCCCTAATAGTTATCGCTTGCTGAACCAAGAAATATTGCGTGTAACCACTCTATTGGGGAAGGCATCAGTTTTAGGTCAAAGTGGGCTTGAACATGCCAGCCCCCTGGCTTCTGGAGGAATATTTTCAAATGGAGGTGCTGACATGAGTGCATGGCCATCACGGTTTCAATCAGAAATGTCAGGTTTATTACAAGCATCATCAGCACAAAATTGGCTAAGTTCCCAAGGTAGTTCATCAGGTCTTATTGTGAAGAGAACCATCAGAGTAGACGTTCCTGTTGACAACTTTCCTAATTATAACTTTGTCGGCCGCCTTCTTGGACCCAGGGGAAACTCTCTCAAGCGAGTGGAGGCAAGTACTGATTGTCGAGTTTTGATTAGAGGGCGTGGTAGCATTAAGGATCCAGCTAGGGAAGAAATGATGAGAGGAAAACCAGGTTATGAGCATTTGAATGAGCCTCTCCACATCCTTGTTGAGGCGGAATTGCCAGTTGAAATTATTGATGCTCGCCTCATGCAAGCCCGTGAGATTCTTGAGGACTTGCTCAAACCAATGGAAGAATCTCATGACTTCTATAAGAAGCAACAGCTACGGGAACTAGCCATGCTTAATGGCACGCTTCGTGAGGAGGGCTCGCCTATGTCCAGTTCCGTATCTCCCTTCCACAATAGCCTTGGAATGAAGAGAGCAAAAACTAGGGGGTAA 717 46.03 MPVLPNSYRLLNQEILRVTTLLGKASVLGQSGLEHASPLASGGIFSNGGADMSAWPSRFQSEMSGLLQASSAQNWLSSQGSSSGLIVKRTIRVDVPVDNFPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIIDARLMQAREILEDLLKPMEESHDFYKKQQLRELAMLNGTLREEGSPMSSSVSPFHNSLGMKRAKTRG 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14126816 14138932 + MELO3C013221.2.1 Cme01g01114 318090

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01114 238 CDD SF1_like-KH 90 212 - -
Cme01g01114 238 Gene3D K Homology domain, type 1 1 218 IPR036612 GO:0003723
Cme01g01114 238 SMART kh_6 87 180 IPR004087 GO:0003676
Cme01g01114 238 PANTHER STAR PROTEIN, HOMODIMERIZATION REGION-RELATED 1 238 - -
Cme01g01114 238 MobiDBLite consensus disorder prediction 213 227 - -
Cme01g01114 238 PANTHER RNA-BINDING PROTEIN RELATED 1 238 IPR045071 -
Cme01g01114 238 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 92 212 IPR036612 GO:0003723
Cme01g01114 238 MobiDBLite consensus disorder prediction 213 238 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01114 K14945 QKI; protein quaking - csv:101217820 465.307
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01114 Cme-Chr1:14126816 Cme08g02071 Cme-Chr8:26136928 4.23E-88 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g734 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa07g01045 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01032 Cme01g01114
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006782 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01114 Cme_Chr01 FPKM 4.989899 8.492168 5.530474 4.593441 17.537163 18.910473 14.867267 0.0 0.0 0.0