Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01117 ATGTTAGGCTTTGAAGGTCCTGGAACTAGTGATGAAATTAGAGAGAGCTTTGAAAATTCTGAAGATGAGAGGCGGCTGTCCAAAATTGGGAACCTCAAGAAAAAGGCAATAAATGCTTCCAATAAATTTACTCACTCTCTTAAGAAGAGAGGAAAGAGGAAAATTGACTACAGGATTCCTTCAGTACCCATAGAAGATGTACGAGATGAAAAAGAGGAAAGTGCTGTCCTTGAATTGCGTCAAAAACTTCTTGAGAGGAATTTATTACCTTTTAGGCTTGATGATTATCATACTTTACTGAGATTTTTGAAAGCTAGAGATTTTAACATGGAAAAGACAATCCGGATGTGGGAAGAAATGCTTAATTGGAGAAGGGAATATGGAGCTGATACCATTCTAGAGGATTTCGAATTTCAAGAGCTTGAAGAGGTGTTGCAGTATTATCCTCAGGGATATCATGGAGTTGATAAAGAAGGCAGACCAGTTTACATAGAGAGACTAGGAAAAGCTCATCCAAGTAGGCTCATGCATATCACGACGATAGATAGATACTTGAAGTACCATGTGCAAGAATTTGAAAGGGCGCTACATGAAAAATTCCCTGCCTGTACAATTGCGTCTAAGAGAAGAATCTGTTCAACAACAACAATATTGGATGTGCAGGGCTTGGGCATGAAAAATTTCTCCCGCACTGCTGCAAATCTCTTAGCTGCCATGACAAAGATAGACAGTTCTTATTATCCTGAGACATTACATAGAATGTATATCGTCAATGCTGGATCTGGTTTTAAGAAGATGCTCTGGCCAGCTGCTCAGAAATTTCTTGATGCGAAGACTGTTTCCAAGATTCAGGTTCTTGAATCCAAGTCGATTGGAAAGCTACTTGAAGTGGTTGATTCAGATCAGTTGCCAGATTTCTTAGGTGGCTCGTGTACATGTAGTGGCGTTGAGGGAGGATGCCTTCGATCTAATAAAGGTCCTTGGAACGATCTTGATATTATGAAGGTTGTGCATAATGCAGGAGCCACCTTTGTAAGGCAAGGCACAAGAGTGGGCAAGAATGAAGCAAAATGTGACTCCCGAGCTCAAATGCCTTCAATGAAGGGAAGAAGTAGTGATACATCATTAGCGGATTCAGGATCAGATCTTGATGACCCGTACTCCCCACTGGGGCGTGCTGGCTCTTTGGTTACTTGTTTGGCTCCAGTTCACGAAGAGCATAGGACAGCTGATCCAAATGCTTACTACAGTTGTGATGATTTCCTACCGGCTAGTTCAGTAGCTGACAGTGCCGAAGGCATTGGAGGTTCTCAGGGTCCATCTCTTGAAATAATGGAGAATGGAAATCTCTTGAACAATGAAGCATCAAACACAGAAGATGTCATAGCAAATGAGCATGAAATTCTGAAACAAAAACTCGAGAAAAGAAACGTTCAGTCTATAGGGAGAGTTCTTATATCTTTCTGGGTTAAATTGGTAGCAGTTGTTCGTAGTTTACAGTTTCAGTTTTGGAAAAGACAGAACAACATATATCCTTCTAACACAGTACACATTACAAATAACAATGCTGCTCCAATCCAAGTGGTAAACGAAGAAGATTTCGTTGGTCCATGTTTAGAGCGTCTTGAAAGGCTAGAAAAAATCTTTATAGAACTGAGCAACAAGCCTGCTAAAATTCCTTTGGAAAAAGAGCATTTGCTTACTGAATCTTTGGACAGAATCAAGTCGGTTGAATTTGACCTGGAGAAAACGAAAAGAGCACTCCACGCTACTGTCTTAAAGCAACTTGAGGCTGGCGAGCTGCTGGAAAAAATACGAGACTCCCAATGTCAACAGAGAAGATTTTTGTGTTAG 1854 40.72 MLGFEGPGTSDEIRESFENSEDERRLSKIGNLKKKAINASNKFTHSLKKRGKRKIDYRIPSVPIEDVRDEKEESAVLELRQKLLERNLLPFRLDDYHTLLRFLKARDFNMEKTIRMWEEMLNWRREYGADTILEDFEFQELEEVLQYYPQGYHGVDKEGRPVYIERLGKAHPSRLMHITTIDRYLKYHVQEFERALHEKFPACTIASKRRICSTTTILDVQGLGMKNFSRTAANLLAAMTKIDSSYYPETLHRMYIVNAGSGFKKMLWPAAQKFLDAKTVSKIQVLESKSIGKLLEVVDSDQLPDFLGGSCTCSGVEGGCLRSNKGPWNDLDIMKVVHNAGATFVRQGTRVGKNEAKCDSRAQMPSMKGRSSDTSLADSGSDLDDPYSPLGRAGSLVTCLAPVHEEHRTADPNAYYSCDDFLPASSVADSAEGIGGSQGPSLEIMENGNLLNNEASNTEDVIANEHEILKQKLEKRNVQSIGRVLISFWVKLVAVVRSLQFQFWKRQNNIYPSNTVHITNNNAAPIQVVNEEDFVGPCLERLERLEKIFIELSNKPAKIPLEKEHLLTESLDRIKSVEFDLEKTKRALHATVLKQLEAGELLEKIRDSQCQQRRFLC 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14226295 14232921 + MELO3C013225.2.1 Cme01g01117 318093

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01117 617 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH13 14 608 - -
Cme01g01117 617 MobiDBLite consensus disorder prediction 1 25 - -
Cme01g01117 617 SUPERFAMILY CRAL/TRIO N-terminal domain 69 136 IPR036273 -
Cme01g01117 617 SMART sec14_4 140 312 IPR001251 -
Cme01g01117 617 Pfam CRAL/TRIO domain 146 309 IPR001251 -
Cme01g01117 617 MobiDBLite consensus disorder prediction 354 387 - -
Cme01g01117 617 SMART CRAL_TRIO_N_2 95 120 IPR011074 -
Cme01g01117 617 MobiDBLite consensus disorder prediction 365 381 - -
Cme01g01117 617 Pfam CRAL/TRIO, N-terminal domain 95 119 IPR011074 -
Cme01g01117 617 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 140 315 IPR001251 -
Cme01g01117 617 Gene3D - 128 350 IPR036865 -
Cme01g01117 617 Coils Coil 67 87 - -
Cme01g01117 617 CDD SEC14 141 309 IPR001251 -
Cme01g01117 617 SUPERFAMILY CRAL/TRIO domain 140 337 IPR036865 -
Cme01g01117 617 MobiDBLite consensus disorder prediction 11 25 - -
Cme01g01117 617 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 14 608 - -
Cme01g01117 617 Gene3D - 60 127 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01117 - - - csv:101217583 1204.5
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme01g01117 Cme11g00135 CCT
Cme01g01117 Cme11g00135 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01117 Cme-Chr1:14226295 Cme11g00135 Cme-Chr11:1338553 1.92E-168 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g350 . . . . . . . . . . Cma02g00383 Cma20g00834 Car02g00248 Car20g00720 . . . . . . . . . . . . . . . . . Cone12ag1162 Cone8ag1211 Cone3ag1175 Cone10ag0981 Lsi10g00391 . Chy11g00362 Cme01g01117 Blo04g00520 . . . . . . . Sed01g0288 Cmo02g00389 Cmo20g00842 . . . . Cpe16g00256 Cpe05g01274 Bhi10g01981 Tan05g1280 Cmetu11g2218 . Hepe08g0999 . . . . . . . . . . Csa02g01281 . Cme11g00135
Vvi19g728 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1268 Cone15ag1294 . Csa07g01043 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01034 Cme01g01117
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003795 2 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 5 1 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01117 Cme_Chr01 FPKM 68.462357 73.224396 36.861195 38.25013 69.088394 65.476479 69.591202 90.109459 91.456039 92.404015