Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01128 ATGTTTGAGGACTTTGATAGACTTTTAAAAGTCCCAGATGAGTGGGCCCCTCCTGAAATTAACCCGTATACTCCTGGGGAAAATCTTCAACAGTGGCTTACCGATGAAAAAGCACGAGATCAGTTTGTTATTCGTTCTGGTTCTGACACTGAGGTCTTCTGGAATGATGCTAGGCATTTGAAGCCCGAGCCTGTCTACAAGCGTCCATACTGGACCGAGAGTTTTGTGCAGTGGTCCTCATTGGGGACTTACCTAGCAACAATTCACCGACAGGGTGCTGCTGTTTGGGGAGGAGCAGGTACCTTTAACCGTCTCATGCGTTTTGCCCATCAACAGGTTAAGTTGATTGATTTTTCTCCTGGCGAGAAATATTTGGTGACTTACAGCAGTCATGAGCCCAACAATCCCCGTGATGCAAATAGGATTGTGATCAATATTTTTGATGTAAGAACTGGAAAAGTCATGAGAGATTTTAAGGGAAGTCCTGATGATTTTGCCACTGGAGGAACTGGTGGTGTTGCTGGGGTATCTTGGCCTGTGTTTAGGTGGGGTGGTGGAAAGGATGATAAATACTTTGCTAGAATTGGGAAGAATGTGATTTCAGTCTATGAAACAGAGACTTTCTCCCTTATTGACAAAAAGTCTTTGAAGGTTGAAAATGTTATGGATTTCTGCTGGTCACCTACAGATCCCATTATTGCCCTGTTTGTTCCTGAGCTAGGTGGTGGGAACCAACCAGCTAGGGTGAGTCTTGTCCAGATCCCCAACAAGGAGGAGTTGAGACAAAAAAATCTTTTTAGCGTTAGCGATTGCAAAATGTACTGGCAAAGCAATGGTGATTATCTTGCTGTCAAGGTTGACAGATATACAAAGACAAAGAAAAGCACATATACAGGGTTTGAGCTTTTACGCATAAAAGAGCGGGATATTCCCATCGAAGTGTTGGAGCTTGAGAATAAGAATGACAAGATCATTGCATTTGCATGGGAGCCAAAGGGGCACAGGTTTGCAGTTATTCATGGCGATAACCCAAGGCCGGATATTAGCTTTTACTCCATGCGAAGCACACACAGCAGTGGCCGAGTGTCAAAACTTACAACTCTCAAAGGCAAGCAGGCCAATGCTCTTTTCTGGTCACCTGCTGGACGTTTTATTATTCTTGCTGGCTTGAAAGGTTTTAATGGACAGTTGGAATTCTACAATGTTGATGAGCTGGAGACGATGGCAACTGCGGAACATTTCATGGCTACTGATATTGAATGGGATCCTACTGGAAGGTATGTCGCTACTGCTGTAACTTCGGTTCATGAGATGGAAAATGGTTTCAACATTTGGTCCTTCAATGGAAAACTCCTCTATCGAATCTTGAAGGACCATTTCTTTCAGTTTGCATGGCGCCCGAGGCCACCATCTTTCTTGAGTCCCGAGCAAGAGGAAGAGATAGCAAAGAATTTGAAGAAGTACACTAAGAAGTACGAAGCTGAAGATCAGGATGTATCTATGCTACTGAGTGAGCAAGACCGCGAGAAACGGAGAATGTTGAAAGACCAGTGGGACAAGTGGTTGAATGAATGGAAGAGATTGCATGAAGAAGAGAAGTTGTTGCGGCAGAAGCTGCGGGATGGTGAAGCCAGTGATGAAGAAGAGGAATACGAAGCCAAAGAGGTTGAAGTCGAAGAGATTCTGGATGTATCGGAGGAAGTTTTGTCCTTTGATTTTGAGCAGTAA 1728 44.16 MFEDFDRLLKVPDEWAPPEINPYTPGENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKRPYWTESFVQWSSLGTYLATIHRQGAAVWGGAGTFNRLMRFAHQQVKLIDFSPGEKYLVTYSSHEPNNPRDANRIVINIFDVRTGKVMRDFKGSPDDFATGGTGGVAGVSWPVFRWGGGKDDKYFARIGKNVISVYETETFSLIDKKSLKVENVMDFCWSPTDPIIALFVPELGGGNQPARVSLVQIPNKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELLRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSTHSSGRVSKLTTLKGKQANALFWSPAGRFIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFAWRPRPPSFLSPEQEEEIAKNLKKYTKKYEAEDQDVSMLLSEQDREKRRMLKDQWDKWLNEWKRLHEEEKLLRQKLRDGEASDEEEEYEAKEVEVEEILDVSEEVLSFDFEQ 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14464159 14469516 + MELO3C013234.2.1 Cme01g01128 318104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01128 575 Gene3D - 311 480 IPR015943 GO:0005515
Cme01g01128 575 SUPERFAMILY DPP6 N-terminal domain-like 74 457 - -
Cme01g01128 575 Coils Coil 544 564 - -
Cme01g01128 575 PANTHER BNACNNG51870D PROTEIN 1 569 - -
Cme01g01128 575 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 2 570 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cme01g01128 575 Pfam Eukaryotic translation initiation factor eIF2A 263 463 IPR013979 -
Cme01g01128 575 Gene3D - 35 286 IPR015943 GO:0005515
Cme01g01128 575 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 1 569 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01128 Cme-Chr1:14464159 Cme07g01936 Cme-Chr7:24553025 9.74E-27 dispersed
Cme01g01128 Cme-Chr1:14464159 Cme01g01129 Cme-Chr1:14464163 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01128 K03253 - csv:101216475 1140.56