Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01134 ATGGGTCGTGGGTTGACGGCGTTCTTCGAGTTCTTCGAAGGAGGGGTCATGGTTCTTCGAGTTCTTTGGCGTTATTCAGCAGAGGAGTCGTGGGTCGACAACGTTCTTCAACGAAGGGGTTCTTTGCCGGAGGGGTTTTCGTCGGAGGGGTTTTCACCAGTTCGTCACAATTTGATGCTGAAGATTCTAAACTTTTCTCAGGAGAAGAATTGTGATATATGTGGAGTGGAGATCACTGACAATGTTGTGGCTGTCAATCAGCATCCTTTCAAGTGGAGCAATGCTTTTCAATGTTCTCAACCATTATCCATGACTTTTTCATGGGGGATGAGATCATGGTTCTACATTTTACTGCTAATAATCTCCGTGGTGACTGACAACGACGTAGCTTACGGTCAGTTGCCTATCGCCTTGCCGGGCTGCTTGTACCGATGCGGTGAAGTGGAGATTCCATACCCATTTGGGCTCACTCCTGAATGCTCTCTCAATGAGGCATTTCTTGTCACTTGCAATGGCTCCTTTAATCCCAACAAGCCCTTCGTCGGCGATATTCCGATCACGAGTATTTCGGTGGATGATGGGGAGTTGGGTATCGAAAGTCCTGTGGCCAAGTATTGTTTTGATGGCGATGGGAACGTCTCTGGAAAAAACGAAACGTTTCTGGAATCCAACCAGTTCACCATCTCGAGGAAGAACATCATCACTGTCATCGGTTGTAGTACTATCTCAACGATTACCGGCATCTTCCAGGGCGACGAGAATTACATAACAGCATGTGCGTCATTCTGTAGTAGCTACCGTAATATGCCGAATGGGTCATGCTCCGGTGTCGGGTGTTGCCAAGTGACAATTCCCGGCGGATTGAATCAAATGAATGTGACGGTCTCAGGGGGCGACATAACAAACGGATCGGATATATATTCATGTGGATATGGTTTCGTGGTGGAAGAGAGTGAGTTTAAGTTCTCATCGGCTTATGTTCCCCACTACCCGAACGCCACCGTGCCGACGGTGTTGGACTGGTCCGTTGGCAATCGGTCCTGTGAGGAGGCTATAACTGGCAAAAGCTATGTCTGTCAAGGAAATAGCAGTTGCCTAAACCCAGAGTTTATGGAGGGTTACCGCTGCAAGTGCTTGGATGGATTCATTGGGAATCCATATTTGCCACACATTGGGTGCCAAGACAAAAATGAATGTGATGATTCTAATGAAAATGATTGTACAAATATGTGTACAAATACGGTAGGAGGTTATGAATGTAAATGCCCACCTGGACACTCCGGCGATGGGAAAAAGCACGGCAATGGCTGTGTTCACCTCCGCCGCCAGCCTCATGTTCTCATATTAGCTTTTGGGATAGCGGTGGGTGTTATGGGGCTACTGGTAAGCTGCTCTTGGTTCTATATCGGCTTCAAGAGATGGAAGCTCATCAAACTCAAAGCAAAATTCTTCCGAAGAAATGGAGGATTAATGTTTGAGCAACAACGTTCCATCCGAGACGAAGCTGCACAAACCGCTAAAATTTTCACTGCTGAGGAATTACAAAAAGCCACTAACAACTACTCCGACGACCGAATCGTCGGCAAAGGCGGCTTCGGAACTGTCTACAAAGGCATCCTCCCCAACGGCGTCGCCGTCGCCATCAAGAAGTCAAAGATCGTCGATAAAACCCAGACCAAACAGTTCGTCAACGAAGTCATTGTTCTCTCCCAAATCAACCACCGAAACACAGTCAAGCTCTTGGGCTGTTGCTTGGAAGAAGAAGTCCCTCTTCTCGTCTACGAATTCGTCTCTAATGGAACACTATACGATCACATTCACAAGAGAAAATTTCAACGCTCCATTCCTTGGAAGATCCGTCTCAGAATCGCTTCCGAAACCGCCGGAGTTCTCTCCTATCTTCACTCCTCTGCCTCAGTTCCCATCATTCACAGAGATGTCAAGTCCACCAACATTCTCCTCGACGACAATTTCACCGCCAAGGTCTCCGATTTCGGTGCTTCGAAGCTCGTCCCGTTAGATCAGGTGGATTTGAACACGATTGTGCAAGGAACTCTCGGTTACCTAGATCCAGAATATTTGCAAACCAGTCAATTGACGGAGAAGAGCGACGTGTACAGTTTTGGCGTGGTTCTGGCGGAATTGATGACAGGAAAAGCTCCTCTGTCCTTCAGCCGATCGGAGGAAGAACGGAATCTATCAATGCACTTTCTAATCGCTATGAAACAGAATCGTCTTGGAGATATTATCGATAGAGGTTTAGGCAGCGATGTGGATGAGAAACAACTGAAGGAAGTTGCGAACCTTGCAAAGCGGTGTTTGAGAGTAAAGGGAGAAGAAAGGCCGACTATGAAGGAAGTTGCTGCAGAGCTTGAAGGACTGTGTCAAATGGCGTCTGGTCATCCATGGATTGTTGATGATAAATCTTCACCTGTTGAAGAAGCAGAGGTTTTGGTTATTGAAGAACATAAAAAGGAAATTCCATTTGATAGTTTTCTTTTCCCCATTGACCAAATGATACCAAAACAACATCCTGGGAGGTAA 2544 46.7 MGRGLTAFFEFFEGGVMVLRVLWRYSAEESWVDNVLQRRGSLPEGFSSEGFSPVRHNLMLKILNFSQEKNCDICGVEITDNVVAVNQHPFKWSNAFQCSQPLSMTFSWGMRSWFYILLLIISVVTDNDVAYGQLPIALPGCLYRCGEVEIPYPFGLTPECSLNEAFLVTCNGSFNPNKPFVGDIPITSISVDDGELGIESPVAKYCFDGDGNVSGKNETFLESNQFTISRKNIITVIGCSTISTITGIFQGDENYITACASFCSSYRNMPNGSCSGVGCCQVTIPGGLNQMNVTVSGGDITNGSDIYSCGYGFVVEESEFKFSSAYVPHYPNATVPTVLDWSVGNRSCEEAITGKSYVCQGNSSCLNPEFMEGYRCKCLDGFIGNPYLPHIGCQDKNECDDSNENDCTNMCTNTVGGYECKCPPGHSGDGKKHGNGCVHLRRQPHVLILAFGIAVGVMGLLVSCSWFYIGFKRWKLIKLKAKFFRRNGGLMFEQQRSIRDEAAQTAKIFTAEELQKATNNYSDDRIVGKGGFGTVYKGILPNGVAVAIKKSKIVDKTQTKQFVNEVIVLSQINHRNTVKLLGCCLEEEVPLLVYEFVSNGTLYDHIHKRKFQRSIPWKIRLRIASETAGVLSYLHSSASVPIIHRDVKSTNILLDDNFTAKVSDFGASKLVPLDQVDLNTIVQGTLGYLDPEYLQTSQLTEKSDVYSFGVVLAELMTGKAPLSFSRSEEERNLSMHFLIAMKQNRLGDIIDRGLGSDVDEKQLKEVANLAKRCLRVKGEERPTMKEVAAELEGLCQMASGHPWIVDDKSSPVEEAEVLVIEEHKKEIPFDSFLFPIDQMIPKQHPGR 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14549563 14569755 - MELO3C013239.2.1 Cme01g01134 318110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01134 847 ProSitePatterns Protein kinases ATP-binding region signature. 527 550 IPR017441 GO:0005524
Cme01g01134 847 SUPERFAMILY EGF/Laminin 394 431 - -
Cme01g01134 847 ProSiteProfiles Protein kinase domain profile. 521 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01134 847 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 115 815 - -
Cme01g01134 847 CDD EGF_CA 395 429 - -
Cme01g01134 847 Gene3D Transferase(Phosphotransferase) domain 1 597 805 - -
Cme01g01134 847 CDD STKc_IRAK 527 794 - -
Cme01g01134 847 ProSiteProfiles EGF-like domain profile. 395 429 IPR000742 -
Cme01g01134 847 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 411 422 IPR000152 -
Cme01g01134 847 SMART egfca_6 348 394 IPR001881 GO:0005509
Cme01g01134 847 SMART egfca_6 395 438 IPR001881 GO:0005509
Cme01g01134 847 Gene3D Laminin 346 438 - -
Cme01g01134 847 ProSitePatterns Serine/Threonine protein kinases active-site signature. 642 654 IPR008271 GO:0004672|GO:0006468
Cme01g01134 847 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 115 815 IPR045274 GO:0007166
Cme01g01134 847 Pfam Protein kinase domain 521 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01134 847 ProSitePatterns Calcium-binding EGF-like domain signature. 395 420 IPR018097 GO:0005509
Cme01g01134 847 SUPERFAMILY Protein kinase-like (PK-like) 504 791 IPR011009 -
Cme01g01134 847 SMART egf_5 347 394 IPR000742 -
Cme01g01134 847 SMART egf_5 398 438 IPR000742 -
Cme01g01134 847 SMART serkin_6 521 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01134 847 Gene3D Phosphorylase Kinase; domain 1 489 596 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01134 Cme-Chr1:14549563 Cme03g00453 Cme-Chr3:6463423 0 dispersed
Cme01g02053 Cme-Chr1:29304754 Cme01g01134 Cme-Chr1:14549563 1.42E-08 dispersed
Cme06g00669 Cme-Chr6:4319910 Cme01g01134 Cme-Chr1:14549563 7.21E-11 dispersed
Cme08g01668 Cme-Chr8:18317466 Cme01g01134 Cme-Chr1:14549563 9.89E-10 dispersed
Cme09g00266 Cme-Chr9:2056099 Cme01g01134 Cme-Chr1:14549563 4.29E-18 dispersed
Cme12g00838 Cme-Chr12:15097475 Cme01g01134 Cme-Chr1:14549563 9.21E-12 dispersed
Cme01g01134 Cme-Chr1:14549563 Cme01g01135 Cme-Chr1:14569552 2.53E-36 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64607 PF00069 Pkinase 2.20E-49 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01134 - - cmo:103490390 1732.61