Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01140 ATGACAAAGTTAGATATAATTCAACCTTATGAAAGAATAACTTCAGAAGGGATCAGTTCAAGAAATGAAGTAGTGAAAGTTGGAGCTATATTTTCACTTAGTTCTGTGAATGGGAAAGTTTCTAAGATTGCCATTGAAGCTGCTGAGAAAGATGTGAATTCTGATCCAAGTGTTCTTGGTGGAAGAAAGCTATCTATTTCAATCCATGATGCAAATTATAGTGGATTTCTTGGTATCACAGGAGCAATGAAGTACATGGTGTCTGACACAGTTGCAATCCTCGGTCCAGAAGATTCTACAATGGCTCATATTCTTTCCCATCTTTCTAATGAACTCCATATCCCATTACTCTCATTTACAGCATTAGATCCAACACTTTCATCATTGCAATATCCATACTTCATTCAAACAGCTCCAAATGATCAGTTCCAAATGACTGCAATTGCTGATATAATTCATTATTACGGTTGGCATGATGTCGTCGTAGTTTTCACCGACGACGATCAATGTCGAAACAGTATGATTGATTTAGGTGATAAACTTGAACAGAGAAGCTTGAAAATTTCCTCTAAAGTCCCACTTCCTCCTTTCCCAACAGCAACAAGAACTCAAGTTCAAGATGCATTGGTAAAGATCAAAATGATGGAATCTCGAGTAATTGTATTGTACACTTTTTCGAAAACTGGTTTCTTGGTTTTCGAAGTCGCTCGAAGCCTTAAAATGATGGAACCTGGTTATGTTTGGATAACTTCTAGTTGGCTATCAACAGAAATAGATTCTACTTCATCACTTCCTTTGGACATTGCCAACTCTATCCAAGGGGTTCTTACACTTCGTCTACACACACCCGATTCGAAAAGTAAGCGATCTTTTATATCGAGATGGAACGAGTTGAGTAACAACTCGTCAATTAGGTTGAATACATATGGCTTATATGCTTATGATACTGTTTGGATGATTGCAAGAGGAGTGAAAAAGTTATTGGATCAAAATGGGACTATCTCATTCTCTAAAGATACAAAAAGTGCTGGTAGTCTTATTGGAGACACCTTGGATTTTAGTTCACTAAGAATCTTTAATGAAGGAAATGATTTGCTCGACAGTTTATTGAATATAAGTATGATTGGTTTAACAGGGCCTATTCAGTTTCAGGATAAATCCCCTGTCCGACCTTCATATGATATCCTAAATGTTGTGAAATCTGACATGAAGAGAATTGGATATTGGTCTAACTATTCCGGTTTATCTGTTGTGGCACCTGAAACGTTGTATCAAAAATCAATTAACCGTTCTATGTCAACCGACAAGTTAAATAGCACAATGTGGCCTGGGGGATTGAAAACAAAGCCTCGGGGTTGGGTTCTTCCACTAGATGGAAGACAGTTACGAATTGGCGTTCCACGAAGAGTTAGTTATCAGGAGTTTGTGATGCCGGGGAATGGTAATGGAACAATCAAAGGATATTGTATTGATGTGTTTACTGCTGCTATCAATTTGCTTCCATATGCAGTTAAATATGAGTTCGTTTTGTTTGGAGATGGTGAGGAGAATCCTAGCTATCTTGAGCTTGTAAATAAGGTTGCATCGAAAGAATTTGATGCTGCTGTTGGTGATATTGCAATTGTGACTAGTCGGACAAAGATCGTCGATTTTACGCAGCCTTATATCGACTCAGGGCTTGTAGTTTTGACCCCTGTGAAGAAGGTGAATTCAAGTCCTTTGGCATTCCTTCGCCCATTCTCACCAATGATGTGGGCTGTCACAGCAACATTTTTCTTCCTCATTGGATTAGTTGTGTGGATACTTGAACATCGGAAAAATGATGAATTTCGAGGACATCCCAGGACGCAAATTGTCACAATTCTCTGGTTTGGCTTCTCAACTATGTTTTTTGCACAAAGAGAAAATGTGGTGAGCACGCTCGGTCGTTTCGTGATTGTCGTGTGGCTTTTTGTGGTTCTAATTATCACCTCCAGCTACACCGCTAACCTCACATCCATATTCACAGTACAACTAGCCACCTCCCCTATTACAGGAATCGATTCATTGATATCTAGCAATGTTCGTATAGGATTCCAAGTTGGTTCGTTTGCTGAAACTTATCTAAGCGAGCAACTTAATGTCCAAAAATCTAGGCTCATTGCTCTTGGATCCCCAGAAGAGTATGCTGCCGCTCTCAAGAACGGAACCGTCGGCGCTATTGTCGATGAGCAGCCATACATCGATCTCTTTCTCACCGAGTATTGCGATTATTCAATACAGGGTCAACAGTTCACCAAAAGTGGATGGGGATTCGCATTTCCACGAGATTCTCCGTTGGCGGTAGATTTATCGACGGCCATACTCACTCTATCGGAAAATGGGCAGCTTCAAAAGATTCACAACAAGTGGTTCTCAAGAAAATCTTGCAGTTCAGGAGATTCGGATTCCGAACAACTTCACTTGCAGAGCTTCATTGGATTGTTCTCCATTTGTGCCGGTGTCTGTTTATTCGCTCTTTTGCTCCATTTTCTCGCCACAATGTGCCAATTCAACCGCCATTTGAAGCAAGATCCAGAAGCTTCAACCACCAGCGCGGACGCGGGTCCCGGTGCTACGCCGCTCCAAAAGTTCTTGAAGTATGCAGATAAGAAGAAGGAAAGAAGGACGAGCTATTCGAAGAGGAAGGTGGAAGATGCATTGTCGAGTGTTCGTTAA 2697 40.67 MTKLDIIQPYERITSEGISSRNEVVKVGAIFSLSSVNGKVSKIAIEAAEKDVNSDPSVLGGRKLSISIHDANYSGFLGITGAMKYMVSDTVAILGPEDSTMAHILSHLSNELHIPLLSFTALDPTLSSLQYPYFIQTAPNDQFQMTAIADIIHYYGWHDVVVVFTDDDQCRNSMIDLGDKLEQRSLKISSKVPLPPFPTATRTQVQDALVKIKMMESRVIVLYTFSKTGFLVFEVARSLKMMEPGYVWITSSWLSTEIDSTSSLPLDIANSIQGVLTLRLHTPDSKSKRSFISRWNELSNNSSIRLNTYGLYAYDTVWMIARGVKKLLDQNGTISFSKDTKSAGSLIGDTLDFSSLRIFNEGNDLLDSLLNISMIGLTGPIQFQDKSPVRPSYDILNVVKSDMKRIGYWSNYSGLSVVAPETLYQKSINRSMSTDKLNSTMWPGGLKTKPRGWVLPLDGRQLRIGVPRRVSYQEFVMPGNGNGTIKGYCIDVFTAAINLLPYAVKYEFVLFGDGEENPSYLELVNKVASKEFDAAVGDIAIVTSRTKIVDFTQPYIDSGLVVLTPVKKVNSSPLAFLRPFSPMMWAVTATFFFLIGLVVWILEHRKNDEFRGHPRTQIVTILWFGFSTMFFAQRENVVSTLGRFVIVVWLFVVLIITSSYTANLTSIFTVQLATSPITGIDSLISSNVRIGFQVGSFAETYLSEQLNVQKSRLIALGSPEEYAAALKNGTVGAIVDEQPYIDLFLTEYCDYSIQGQQFTKSGWGFAFPRDSPLAVDLSTAILTLSENGQLQKIHNKWFSRKSCSSGDSDSEQLHLQSFIGLFSICAGVCLFALLLHFLATMCQFNRHLKQDPEASTTSADAGPGATPLQKFLKYADKKKERRTSYSKRKVEDALSSVR 898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14678459 14684734 - MELO3C013246.2.1 Cme01g01140 318116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01140 898 Pfam Receptor family ligand binding region 43 400 IPR001828 -
Cme01g01140 898 SMART GluR_14 463 800 IPR001320 GO:0015276|GO:0016020
Cme01g01140 898 Pfam Ligand-gated ion channel 800 828 IPR001320 GO:0015276|GO:0016020
Cme01g01140 898 Gene3D - 43 390 - -
Cme01g01140 898 MobiDBLite consensus disorder prediction 872 898 - -
Cme01g01140 898 CDD GluR_Plant 460 798 - -
Cme01g01140 898 Gene3D - 573 714 - -
Cme01g01140 898 PANTHER GLUTAMATE RECEPTOR 3.3 15 882 - -
Cme01g01140 898 SUPERFAMILY Periplasmic binding protein-like I 20 453 IPR028082 -
Cme01g01140 898 PIRSF IGluLR_plant 8 896 IPR017103 -
Cme01g01140 898 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 15 882 - -
Cme01g01140 898 Gene3D - 140 415 - -
Cme01g01140 898 MobiDBLite consensus disorder prediction 853 898 - -
Cme01g01140 898 Gene3D - 724 805 - -
Cme01g01140 898 Gene3D - 456 572 - -
Cme01g01140 898 Pfam Bacterial extracellular solute-binding proteins, family 3 472 799 IPR001638 -
Cme01g01140 898 SUPERFAMILY Periplasmic binding protein-like II 440 800 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01140 Cme-Chr1:14678459 Cme08g00998 Cme-Chr8:6507879 0 dispersed
Cme01g01140 Cme-Chr1:14678459 Cme11g00787 Cme-Chr11:10028159 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01140 K05387 - csv:101208602 1636.31