Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01147 ATGGGTAAGGTAGTGGAGAGGAAGAAGAGGAAGAAAGGGCGGCCATCGCTGTTGGATCTTCAAAAGCGGAATCTCAAGGAACAACAACAAGAACAACAACACCAACAACATCAAACAAAACGAATCAACAACAACTCTTCCCCCTCAATTTCCAACCCTAATTACGCCTCCTCAACTCCCTTGCGCCGATCTACTCGCCGGAATCCCAACTCCGAAGACCTCACTCCCGATAACCTCACTGATAACCACCCAGATGCTGAATACAACCACCAATTGGCTGGTAGCCGCCGCGAGAAGAAACTCAAGCTTGTTCTCAGATTGCACTCCCAGAAATCCCCAGTCAATTCCTCGTCTCTTAATTCTTGTGGGTCTGATTCTAATGCGGAGGGGGATGGTAATGCTGCTTCGATTAGCAAGAAGCGGAAGATCGGTTCGATTGCGGAGGGATCTAGGATTCAAGACTCCGAGAAGGGTGAAAAGTCCATTTCTGCTACAAACCCATCAGAAACCCTTCAAGGGTTGCATATGGATTCGGGACCCTCGACGCCTTTACCAGATAAGAAGCTTTTAGTTTTCATCCTCGACAGGCTTCAAAAGAAGGACGTCTATGGTGTGTTTTCCGAACCAGTGGACCCCAATGAGCTTCCAGACTATCACGAAATTATAGATCATCCTATGGATTTTGGAACTGTGCGGGACAAGCTTACTTCTGGAGCTTATAGCACCTTGGAACAGTTCGAAAAAGACGTTCTCTTAATCAGTTCGAATGCAATGCAATATAATTCACCAGATACTATATATTTTCGGCAGGCACGTACCATACAAGAGTTGGCAAAAAAGAATTTTAAGAACTTGAGACAAGATAGTGATGATAATGAACCAGAACCTAAAGTGGTGAGAAGAGGTAGACCACCAACCAAGAATTTAAAGAAACCATTAGGTAGACCTTCCTTGGAACGCGCTGGTTCAGAGTTTTCCCCAGATGCCACTCTTGCTACTGGTGGTGAAAATGCAAATCGGTCCAGCGATTTGAGGAAAGGACTTCATCATTTGGAAAAGCCTAGCTTTGCTGATTTTTCTGGCAGATTATCCTTTTCTTCTAATAGTGACGCTGCATTTAATTTGTTTAACCCGAGCAGATTTGATAGAAGTGAGGATATTACAGGTTCTGCACTGAGATTTAATTCAGTGAGGCAGGGAAAAAAACCTATCGTCTCCGAGGAGAATAGGCGTAATACATATAGTCAATTTCAGGCGGCAACTGCTTTGCTCGAGCCCGCTGTGTTGAATACGTTTGATAGAGAGAGGAAGGTTTTAATGCCAGTTGGCCTTTTCTTGGAGCATGCATATGCACGAAGCCTCGCTCGATTTGCTGCAGATCTTGGATCTGTGGCATGGACAGTTGCTTCTAAGAAGATTGAAAGATCTTTGCCTTCAGGTTCGAGTTTCGGTCCTGGATGGGTTATAGAAAATGATATCACACCAAAGAGGGTGTTTCTACCACAAGCTGAACCCGGTAAAATGTCGACGTTGCAGCCCTTTCTTGGGCATGAAAGTGTGGATCCAGATGTAAAGCCTCTTACTAATGAACAAAAGGGGGTTCCGTCATCTGACAACTCTGAAGCTGATACATCACACAAGACGCATGACGGGCTTTCTCGTGCCCCCAGTTCAGGTGGCCAGGTAAACAGGCCTCCAACTGAGTTTGCTGCAGCTTCGTCATCACCATCGAGTACTCAACAATCTTCTGAGCAATGCAAGGGGCAGGTGGAAACAGTTGAAGGATCCAATCCCAGTGGCAATTATAATGTATTGGAAAGTAGTATTCCAATCTCAAGGCCTTCATTTCATAAACACCATAGTCCAACACTCCACCCTGGTATGAATGGATTCAATGGAGCTTATGGTTTTGATCTCTCTGCTCACAGGGGGAAACTAATAGGACCGTCGGATTCCGCTGGTGTGAAGCCTCAGTCATCTCAAATGCTCGAGACGATCTCCAGGACTAATGCTAATTTCATCCTTCCAGCAATGGCAACCAATCTGAACCCGAAAGAACCGAAATGCCCAGAAAACAATCCTAGTACAACAAACTCTTCCAGTTCATTGGCTGGGTCGGGGAACGATGGTCTAATCAACCCTGCAGTCAGTCCACATTTACGATCACCTTGGCATCAAGGAAAACCACCAGCAGAGAAAACAGATGCAGTAGTAACAACAATATACAAACCGGAATCGGTTCCTCCGGACCTGAATGTGAGATTTAAATCTCCAGGATCACCTAGCTCTAGTAAGGTGGACTCTGCTCACCCTGATTTGGTTTTACAGCTATGA 2334 45.37 MGKVVERKKRKKGRPSLLDLQKRNLKEQQQEQQHQQHQTKRINNNSSPSISNPNYASSTPLRRSTRRNPNSEDLTPDNLTDNHPDAEYNHQLAGSRREKKLKLVLRLHSQKSPVNSSSLNSCGSDSNAEGDGNAASISKKRKIGSIAEGSRIQDSEKGEKSISATNPSETLQGLHMDSGPSTPLPDKKLLVFILDRLQKKDVYGVFSEPVDPNELPDYHEIIDHPMDFGTVRDKLTSGAYSTLEQFEKDVLLISSNAMQYNSPDTIYFRQARTIQELAKKNFKNLRQDSDDNEPEPKVVRRGRPPTKNLKKPLGRPSLERAGSEFSPDATLATGGENANRSSDLRKGLHHLEKPSFADFSGRLSFSSNSDAAFNLFNPSRFDRSEDITGSALRFNSVRQGKKPIVSEENRRNTYSQFQAATALLEPAVLNTFDRERKVLMPVGLFLEHAYARSLARFAADLGSVAWTVASKKIERSLPSGSSFGPGWVIENDITPKRVFLPQAEPGKMSTLQPFLGHESVDPDVKPLTNEQKGVPSSDNSEADTSHKTHDGLSRAPSSGGQVNRPPTEFAAASSSPSSTQQSSEQCKGQVETVEGSNPSGNYNVLESSIPISRPSFHKHHSPTLHPGMNGFNGAYGFDLSAHRGKLIGPSDSAGVKPQSSQMLETISRTNANFILPAMATNLNPKEPKCPENNPSTTNSSSSLAGSGNDGLINPAVSPHLRSPWHQGKPPAEKTDAVVTTIYKPESVPPDLNVRFKSPGSPSSSKVDSAHPDLVLQL 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14755047 14760243 + MELO3C013253.2.1 Cme01g01147 318123

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01147 777 SUPERFAMILY Bromodomain 180 291 IPR036427 GO:0005515
Cme01g01147 777 MobiDBLite consensus disorder prediction 109 182 - -
Cme01g01147 777 PRINTS Bromodomain signature 201 214 IPR001487 GO:0005515
Cme01g01147 777 PRINTS Bromodomain signature 215 231 IPR001487 GO:0005515
Cme01g01147 777 PRINTS Bromodomain signature 231 249 IPR001487 GO:0005515
Cme01g01147 777 PRINTS Bromodomain signature 249 268 IPR001487 GO:0005515
Cme01g01147 777 MobiDBLite consensus disorder prediction 109 133 - -
Cme01g01147 777 MobiDBLite consensus disorder prediction 509 606 - -
Cme01g01147 777 MobiDBLite consensus disorder prediction 78 96 - -
Cme01g01147 777 ProSitePatterns Bromodomain signature. 204 260 IPR018359 -
Cme01g01147 777 MobiDBLite consensus disorder prediction 144 158 - -
Cme01g01147 777 MobiDBLite consensus disorder prediction 17 34 - -
Cme01g01147 777 CDD Bromodomain 186 280 - -
Cme01g01147 777 Pfam Bromodomain 193 272 IPR001487 GO:0005515
Cme01g01147 777 Coils Coil 18 45 - -
Cme01g01147 777 MobiDBLite consensus disorder prediction 1 96 - -
Cme01g01147 777 MobiDBLite consensus disorder prediction 35 77 - -
Cme01g01147 777 MobiDBLite consensus disorder prediction 283 342 - -
Cme01g01147 777 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 777 - -
Cme01g01147 777 SMART bromo_6 179 287 IPR001487 GO:0005515
Cme01g01147 777 MobiDBLite consensus disorder prediction 159 177 - -
Cme01g01147 777 MobiDBLite consensus disorder prediction 681 777 - -
Cme01g01147 777 MobiDBLite consensus disorder prediction 551 606 - -
Cme01g01147 777 MobiDBLite consensus disorder prediction 283 302 - -
Cme01g01147 777 MobiDBLite consensus disorder prediction 1 16 - -
Cme01g01147 777 MobiDBLite consensus disorder prediction 686 708 - -
Cme01g01147 777 ProSiteProfiles Bromodomain profile. 198 268 IPR001487 GO:0005515
Cme01g01147 777 PANTHER BROMODOMAIN AND WD REPEAT-CONTAINING PROTEIN 1-LIKE 1 777 - -
Cme01g01147 777 Gene3D - 184 301 IPR036427 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01147 K22184 BRD9; bromodomain-containing protein 9 - csv:101218234 1394.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01022 Cme-Chr1:12616065 Cme01g01147 Cme-Chr1:14755047 1.92E-35 dispersed
Cme01g01024 Cme-Chr1:12619135 Cme01g01147 Cme-Chr1:14755047 5.00E-43 dispersed
Cme01g01147 Cme-Chr1:14755047 Cme07g00050 Cme-Chr7:309866 2.87E-96 dispersed
Cme01g01848 Cme-Chr1:26166838 Cme01g01147 Cme-Chr1:14755047 5.32E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g294 . . . . . Bpe12g00149 . . Cmo19g00818 Cmo11g01786 . . . . . Cpe04g00631 Cpe15g00642 Bhi05g01248 Tan02g0781 . . . . . Cla02g00347 Cam02g0356 Cec02g0357 Cco02g0363 Clacu02g0348 Cmu02g0345 Cre02g0677 . . . . . Csa07g00186 . Cme01g01147 Blo04g00606 Blo13g00473 . Bda14g00648 Bpe15g00784 . Bma03g00637 Bma08g00717 . . . Cma11g01333 Cma19g00798 Car11g01413 Car19g00614 . . . . . . . . . . . . . . . . Lsi11g01285 . Chy01g00594 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005813 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01147 Cme_Chr01 FPKM 15.139765 16.098848 12.415615 13.960387 12.012975 11.912688 12.953413 16.484724 19.843464 17.028969