Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01150 ATGGACCGAGCAACCAAGCTCTCAAAAGCCATTTACCTGAATTCCAACAATCCTAACCTAGCATGGCTTCTCTTCAAGCGAATCCTCTCTTCCCCGATCCCCGCTTCCTCTTCCTTCTTCAAGCCCTCTCTTCAATCTGTACCCATTATTGCCCGTATCCTCATCACTTCAAAAATGCACCCACAGATCGATCACCTTCACCAACTCCTCTTGTCGCAGCACCGGGATTTTGCTCATCCATCTGGATTTTCACTTGTTCGAACGTTGGCTGATTTGGGTCTCTTTGAAAACGCCATTTCTCAGTTTCGTTCGCTTCGAGCCAGGTTTCCTCATGACCCTCCTCCTATTTCTTTCTACAATCTTCTGTTTCGATGTTCTTTGAAGGAAGGCCGTGTTGATTGTGTGATTTGGTTATATAAGGATATGGTTGTTGCGAGAGTTAACCCACAGACTTATACTTTTAATCTGCTGATAAGTGCGCTTTGTGAAATGGGATACTTGGAGAATGCACGAGAAGTGTTTGATAAAATGTCTGAAAAAGGGTGTAAGCCTAATGAGTTTAGTCTTGGGATTTTGGTTCGTGGGTATTGTAGAGCTGGGCTCCATTCTAATGGGATTGATCTTTTGGACGAGATGAGGAGCTCTGGTGCTTTTCCTAATAGGGTTGCGTACAATACTGTGATATCTTCTCTTTGTGGAGAAGGTCAGACTGAGGAGGCTGAAAAATTGGTGGAAAAGATGAGAGAGGTTGGTCTTTCTCCTGATACTGTAACTTTCAATTGTAGAATTGCTGCCCTCTGTAAATCTGGGCAAATTTTAGAAGCTTCCAGAATTTTTAGAGATATGCAAATAGATGAAGAGATGGGGTTACCGAAGCCTAATACTGTAACATATAATTTAATGCTAGAAGGATTTTGTAGTGAAGGAATGTTCGAGGAAGCTAGGGCTATCTTTGATTCTATGAAAATTTCTGAAACTCTGAACTTGAAAAGCTATAACATATGGTTGTTAGGATTGGTTAGAAGTGGAAAGCTCCTTGAAGCGCGTTTAATTCTTAATGAGATGGCAGAAAAGAATATAAAACCCAATCTCTACTCCTACAACATTTTGGTACATGGACTTTGTAGATATGGAATGTTTTCTGATGCAAGATCTATACTAGGCGTAATGAGAGAGAGTGGTGTTGCTCCAGATACTGTAACTTATAGTACCTTACTGCATGGATACTGTAGAAGAGGAAAGATGCTTGAAGCCAACTATGTTCTTCGTGAAATGATACAGGTTGGTTGCTTTCCCAATATGTATACTTGTAACATCCTACTTAACAGCCTGTGGAAAGAGGGGAGGGCATCAGAGGCGGAAGACTTGCTGCAAAAGATGAATGAAAGAGGTTATGGGTTGGATAATGTAACTTGTAATACAATGATTAATGGCCTCTGTAAAGCTGGGAATCTGGACAAAGCTATTGAAATAGTGAGTGGCATGTGGACACATGGAAGTGCTTCTCTTGGTAATCTAGGGAACTCTTTTATTGGTCTTTTTGATATTCGAAATAGTGGGAAGAAGTGTTTGCCAGACCCAATCACATATGCGACCATAATAGGTGGGTTATGTAAGGTAGGGCGGGTTGATGAAGCAAAAAAGAAGCTTCTGGAGATGATTGGGAAAAATTTATCTCCTGATTCACTAATATTTGATACTTTCATATATAATTACTGTAAACAAGGAAAGTTATCTTCTGCTTTTAGAGTTCTCAAAGAAATGGAGAAAAAAGGTTGCAACAAGAGCCTTCGAACATATAATTCACTGATCCAGGGTTTTGGTAGTGAAAATCAAATATTTGAAATATATGGATTGATGGATGAGATGAAAGAAAGAGGAATTTTTCCTAACGTCTACACTTATAATAACATTATGCGCTGCCTATCTGAAGGTGGGAAACTCAAAGATGCCACTTGTCTTTTGGATGAAATGCTGCAGAAGGGGATATCTCCTAATATATATACATTTAGGATTTTAATTGGAGCTTTCTTCAAGGCTTGCGACTTTGGAGCCGCCCAAGAATTATTTGAGATAGCTTTAAGCCTATGTGGCCATAAGGAATCCTTGTATAGTTTTATGTTCAATGAGCTACTAGCTGGAGGTGAAACATTGAAGGCTAAAGAGCTTTTTGAAGCTGCATTAGATAGATCTCTAGCCTTGAAAAATTTTCTTTATAGGGACCTGATTGAAAGACTTTGCAAGGACGGAAAGTTAGATGATGCAAGTTTCATTCTTCATAAGATGATGGATAAACAGTATAGTTTTGACCCTGCATCATTCATGCCAGTGATTGATGAATTGGGTAAAAGAGGGAGCAAGCATGCAGCTGATGAATTTGCAGAAAGGATGATGGAAATGGCTTCAGAAACAGGTTTCAACCAACATGAGAATAAGAATATTCGAGGAAGATTGAATAATAATGATGAAAGTGATTGGCAAAAGATAATTCACAGAAACGATGGCAGTGGGATTGCACAGAAAACTCTTAAGCGTGTGTTAAAAGGCTGGGGTCAAGGAAGTATTGCAACTTCACAGCCACAGAAATTCATCACATGTGATCACTGGGATGGTGATGCTTAG 2622 39.59 MDRATKLSKAIYLNSNNPNLAWLLFKRILSSPIPASSSFFKPSLQSVPIIARILITSKMHPQIDHLHQLLLSQHRDFAHPSGFSLVRTLADLGLFENAISQFRSLRARFPHDPPPISFYNLLFRCSLKEGRVDCVIWLYKDMVVARVNPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHSNGIDLLDEMRSSGAFPNRVAYNTVISSLCGEGQTEEAEKLVEKMREVGLSPDTVTFNCRIAALCKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMKISETLNLKSYNIWLLGLVRSGKLLEARLILNEMAEKNIKPNLYSYNILVHGLCRYGMFSDARSILGVMRESGVAPDTVTYSTLLHGYCRRGKMLEANYVLREMIQVGCFPNMYTCNILLNSLWKEGRASEAEDLLQKMNERGYGLDNVTCNTMINGLCKAGNLDKAIEIVSGMWTHGSASLGNLGNSFIGLFDIRNSGKKCLPDPITYATIIGGLCKVGRVDEAKKKLLEMIGKNLSPDSLIFDTFIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGFGSENQIFEIYGLMDEMKERGIFPNVYTYNNIMRCLSEGGKLKDATCLLDEMLQKGISPNIYTFRILIGAFFKACDFGAAQELFEIALSLCGHKESLYSFMFNELLAGGETLKAKELFEAALDRSLALKNFLYRDLIERLCKDGKLDDASFILHKMMDKQYSFDPASFMPVIDELGKRGSKHAADEFAERMMEMASETGFNQHENKNIRGRLNNNDESDWQKIIHRNDGSGIAQKTLKRVLKGWGQGSIATSQPQKFITCDHWDGDA 873
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14782739 14790102 + MELO3C013256.2.1 Cme01g01150 318126

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01150 873 Gene3D Tetratricopeptide repeat domain 323 427 IPR011990 GO:0005515
Cme01g01150 873 Gene3D Tetratricopeptide repeat domain 204 322 IPR011990 GO:0005515
Cme01g01150 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 561 595 IPR002885 -
Cme01g01150 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 220 254 IPR002885 -
Cme01g01150 873 TIGRFAM PPR: pentatricopeptide repeat domain 633 667 IPR002885 -
Cme01g01150 873 TIGRFAM PPR: pentatricopeptide repeat domain 190 220 IPR002885 -
Cme01g01150 873 TIGRFAM PPR: pentatricopeptide repeat domain 365 399 IPR002885 -
Cme01g01150 873 TIGRFAM PPR: pentatricopeptide repeat domain 152 186 IPR002885 -
Cme01g01150 873 TIGRFAM PPR: pentatricopeptide repeat domain 222 256 IPR002885 -
Cme01g01150 873 TIGRFAM PPR: pentatricopeptide repeat domain 257 283 IPR002885 -
Cme01g01150 873 TIGRFAM PPR: pentatricopeptide repeat domain 565 593 IPR002885 -
Cme01g01150 873 TIGRFAM PPR: pentatricopeptide repeat domain 528 562 IPR002885 -
Cme01g01150 873 TIGRFAM PPR: pentatricopeptide repeat domain 296 322 IPR002885 -
Cme01g01150 873 TIGRFAM PPR: pentatricopeptide repeat domain 435 468 IPR002885 -
Cme01g01150 873 TIGRFAM PPR: pentatricopeptide repeat domain 470 499 IPR002885 -
Cme01g01150 873 TIGRFAM PPR: pentatricopeptide repeat domain 331 363 IPR002885 -
Cme01g01150 873 TIGRFAM PPR: pentatricopeptide repeat domain 400 433 IPR002885 -
Cme01g01150 873 TIGRFAM PPR: pentatricopeptide repeat domain 599 632 IPR002885 -
Cme01g01150 873 Pfam PPR repeat 522 553 IPR002885 -
Cme01g01150 873 Pfam PPR repeat 292 322 IPR002885 -
Cme01g01150 873 Pfam PPR repeat 464 495 IPR002885 -
Cme01g01150 873 Gene3D Tetratricopeptide repeat domain 43 203 IPR011990 GO:0005515
Cme01g01150 873 Gene3D Tetratricopeptide repeat domain 591 692 IPR011990 GO:0005515
Cme01g01150 873 Gene3D Tetratricopeptide repeat domain 693 811 IPR011990 GO:0005515
Cme01g01150 873 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 4 826 - -
Cme01g01150 873 Pfam PPR repeat 739 765 IPR002885 -
Cme01g01150 873 Pfam PPR repeat 119 144 IPR002885 -
Cme01g01150 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 324 IPR002885 -
Cme01g01150 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 468 502 IPR002885 -
Cme01g01150 873 PANTHER OS02G0132100 PROTEIN 4 826 - -
Cme01g01150 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 596 630 IPR002885 -
Cme01g01150 873 Pfam PPR repeat family 630 678 IPR002885 -
Cme01g01150 873 Pfam PPR repeat family 149 198 IPR002885 -
Cme01g01150 873 Pfam PPR repeat family 219 268 IPR002885 -
Cme01g01150 873 Pfam PPR repeat family 397 444 IPR002885 -
Cme01g01150 873 Pfam PPR repeat family 329 376 IPR002885 -
Cme01g01150 873 Pfam PPR repeat family 560 607 IPR002885 -
Cme01g01150 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 285 IPR002885 -
Cme01g01150 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 526 560 IPR002885 -
Cme01g01150 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Cme01g01150 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 219 IPR002885 -
Cme01g01150 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 150 184 IPR002885 -
Cme01g01150 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 432 IPR002885 -
Cme01g01150 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 328 362 IPR002885 -
Cme01g01150 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 631 665 IPR002885 -
Cme01g01150 873 SUPERFAMILY TPR-like 93 729 IPR011990 GO:0005515
Cme01g01150 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 433 467 IPR002885 -
Cme01g01150 873 Gene3D Tetratricopeptide repeat domain 508 590 IPR011990 GO:0005515
Cme01g01150 873 Gene3D Tetratricopeptide repeat domain 428 498 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01150 - - - csv:101217754 1691.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01150 Cme-Chr1:14782739 Cme01g01945 Cme-Chr1:27830320 1.52E-44 dispersed
Cme01g01150 Cme-Chr1:14782739 Cme12g00737 Cme-Chr12:13440985 6.21E-61 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g286 . . . . . . . . . . . . . . Sed05g2175 . . Bhi05g01588 Tan02g0581 Cmetu01g0188 Lac12g0483 Hepe02g0372 . . Cla02g00351 Cam02g0359 Cec02g0360 Cco02g0366 Clacu02g0351 Cmu02g0348 Cre02g0679 Cone12ag1274 . . . . Csa07g00182 . Cme01g01150 Blo04g00604 . . Bda14g00645 Bpe15g00786 . Bma03g00636 . . . . . . . Car19g00612 . . . . . . . . . . . . . . . . Lsi11g01282 . Chy01g00597 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012269 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01150 Cme_Chr01 FPKM 3.417281 2.9594 4.114832 3.468601 5.162818 3.475797 4.502954 6.670153 5.585371 6.749542