Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme01g01152 | ATGAATAATCCACATTTCAACTCCCTCTCGGTTACCAGTACTAGCAGCTCTCCTATCGACCTCATCACCATTCCTTTTCAACCTTCTACGTCCTCTTTCGACTCATCCAACCGCCGTCGTCCTCGCAAGAAACGCTCAAGAACCCAAACCGACGACGATCACTACTCCACCACCGTTCTCACCACTTCTAAATCAAAGTACACCAAGAAACCCGATCCTAATGCACCCAAGATTACTCGTCCATGTACTGAGTGCGGGAAGAAATTTTGGTCCGATAAAGCACTTTTCGGTCACATGAGGTGTCATCCTGAACGTCAATGGCGTGGGATTATTCCTCCAGTTAATTACCGTCGTCCCATTTCGGTTTCTCCTAATTTTAGCCCTAATCTCGAACACTCTTCTAATTCGTTTACTGAAGAAGATCAAGACATTGCCAATTCTTTATTAATGCTTGCCAATGGCCCTAATTTCTCGATTTCTAGGGTTTCTGATTCTCGATTTGAATGTTCGAGTTGTAAGAAAGTGTTTGGATCGCATCAAGCACTTGGAGGACATAGAGCAAGTCATAAGAATGTAAGAGGCTGTTTCGCTATGGCAAAGAGCGATGAAGAAGAAACGGAAGATGAAATTACTCTCTTTGGGGATTTTGGACGCCATGAAAGCAGTTTCAATCTGGAGAATAAAATGTCGATGATGATTCTAGAAACAGATCAAAACCATAAGAAGAGATTCCAATGGGAGAATAATGCAGCTACAGATCAGGAGAGATTTGTTAATTTGGATTTAAACTTGCCTGCTCCTCTTGAAGATGATTCTTCTTCTTCATATTCGTCAAGCCTCACTTTGGATCTCAGGTTGGGTCTTTGA | 867 | 42.45 | MNNPHFNSLSVTSTSSSPIDLITIPFQPSTSSFDSSNRRRPRKKRSRTQTDDDHYSTTVLTTSKSKYTKKPDPNAPKITRPCTECGKKFWSDKALFGHMRCHPERQWRGIIPPVNYRRPISVSPNFSPNLEHSSNSFTEEDQDIANSLLMLANGPNFSISRVSDSRFECSSCKKVFGSHQALGGHRASHKNVRGCFAMAKSDEEETEDEITLFGDFGRHESSFNLENKMSMMILETDQNHKKRFQWENNAATDQERFVNLDLNLPAPLEDDSSSSYSSSLTLDLRLGL | 288 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 14796460 | 14797326 | - | MELO3C013258.2.1 | Cme01g01152 | 318128 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme01g01152 | 288 | PANTHER | ZINC FINGER PROTEIN ZAT2-RELATED | 26 | 288 | - | - | |
Cme01g01152 | 288 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 169 | 189 | IPR013087 | - | |
Cme01g01152 | 288 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 80 | 107 | IPR013087 | - | |
Cme01g01152 | 288 | Pfam | C2H2-type zinc finger | 166 | 190 | - | - | |
Cme01g01152 | 288 | Pfam | C2H2-type zinc finger | 81 | 104 | - | - | |
Cme01g01152 | 288 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 167 | 194 | IPR013087 | - | |
Cme01g01152 | 288 | MobiDBLite | consensus disorder prediction | 26 | 75 | - | - | |
Cme01g01152 | 288 | MobiDBLite | consensus disorder prediction | 53 | 69 | - | - | |
Cme01g01152 | 288 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 82 | 102 | IPR013087 | - | |
Cme01g01152 | 288 | SUPERFAMILY | beta-beta-alpha zinc fingers | 81 | 189 | IPR036236 | - | |
Cme01g01152 | 288 | Gene3D | Classic Zinc Finger | 81 | 189 | - | - | |
Cme01g01152 | 288 | PANTHER | ZINC FINGER PROTEIN ZAT2-RELATED | 26 | 288 | - | - | |
Cme01g01152 | 288 | SMART | c2h2final6 | 167 | 189 | IPR013087 | - | |
Cme01g01152 | 288 | SMART | c2h2final6 | 80 | 102 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme01g01152 | Cme-Chr1:14796460 | Cme06g00031 | Cme-Chr6:227920 | 1.75E-12 | dispersed | |
Cme06g02705 | Cme-Chr6:34255653 | Cme01g01152 | Cme-Chr1:14796460 | 8.04E-14 | dispersed | |
Cme01g01152 | Cme-Chr1:14796460 | Cme12g01957 | Cme-Chr12:25469040 | 5.70E-10 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40740 | PF13912 | zf-C2H2_6 | 7.00E-10 | CL0361 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme01g01152 | - | - | csv:105436224 | 509.99 |