Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01152 ATGAATAATCCACATTTCAACTCCCTCTCGGTTACCAGTACTAGCAGCTCTCCTATCGACCTCATCACCATTCCTTTTCAACCTTCTACGTCCTCTTTCGACTCATCCAACCGCCGTCGTCCTCGCAAGAAACGCTCAAGAACCCAAACCGACGACGATCACTACTCCACCACCGTTCTCACCACTTCTAAATCAAAGTACACCAAGAAACCCGATCCTAATGCACCCAAGATTACTCGTCCATGTACTGAGTGCGGGAAGAAATTTTGGTCCGATAAAGCACTTTTCGGTCACATGAGGTGTCATCCTGAACGTCAATGGCGTGGGATTATTCCTCCAGTTAATTACCGTCGTCCCATTTCGGTTTCTCCTAATTTTAGCCCTAATCTCGAACACTCTTCTAATTCGTTTACTGAAGAAGATCAAGACATTGCCAATTCTTTATTAATGCTTGCCAATGGCCCTAATTTCTCGATTTCTAGGGTTTCTGATTCTCGATTTGAATGTTCGAGTTGTAAGAAAGTGTTTGGATCGCATCAAGCACTTGGAGGACATAGAGCAAGTCATAAGAATGTAAGAGGCTGTTTCGCTATGGCAAAGAGCGATGAAGAAGAAACGGAAGATGAAATTACTCTCTTTGGGGATTTTGGACGCCATGAAAGCAGTTTCAATCTGGAGAATAAAATGTCGATGATGATTCTAGAAACAGATCAAAACCATAAGAAGAGATTCCAATGGGAGAATAATGCAGCTACAGATCAGGAGAGATTTGTTAATTTGGATTTAAACTTGCCTGCTCCTCTTGAAGATGATTCTTCTTCTTCATATTCGTCAAGCCTCACTTTGGATCTCAGGTTGGGTCTTTGA 867 42.45 MNNPHFNSLSVTSTSSSPIDLITIPFQPSTSSFDSSNRRRPRKKRSRTQTDDDHYSTTVLTTSKSKYTKKPDPNAPKITRPCTECGKKFWSDKALFGHMRCHPERQWRGIIPPVNYRRPISVSPNFSPNLEHSSNSFTEEDQDIANSLLMLANGPNFSISRVSDSRFECSSCKKVFGSHQALGGHRASHKNVRGCFAMAKSDEEETEDEITLFGDFGRHESSFNLENKMSMMILETDQNHKKRFQWENNAATDQERFVNLDLNLPAPLEDDSSSSYSSSLTLDLRLGL 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14796460 14797326 - MELO3C013258.2.1 Cme01g01152 318128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01152 288 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 26 288 - -
Cme01g01152 288 ProSitePatterns Zinc finger C2H2 type domain signature. 169 189 IPR013087 -
Cme01g01152 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 107 IPR013087 -
Cme01g01152 288 Pfam C2H2-type zinc finger 166 190 - -
Cme01g01152 288 Pfam C2H2-type zinc finger 81 104 - -
Cme01g01152 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 167 194 IPR013087 -
Cme01g01152 288 MobiDBLite consensus disorder prediction 26 75 - -
Cme01g01152 288 MobiDBLite consensus disorder prediction 53 69 - -
Cme01g01152 288 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Cme01g01152 288 SUPERFAMILY beta-beta-alpha zinc fingers 81 189 IPR036236 -
Cme01g01152 288 Gene3D Classic Zinc Finger 81 189 - -
Cme01g01152 288 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 26 288 - -
Cme01g01152 288 SMART c2h2final6 167 189 IPR013087 -
Cme01g01152 288 SMART c2h2final6 80 102 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01152 Cme-Chr1:14796460 Cme06g00031 Cme-Chr6:227920 1.75E-12 dispersed
Cme06g02705 Cme-Chr6:34255653 Cme01g01152 Cme-Chr1:14796460 8.04E-14 dispersed
Cme01g01152 Cme-Chr1:14796460 Cme12g01957 Cme-Chr12:25469040 5.70E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40740 PF13912 zf-C2H2_6 7.00E-10 CL0361 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01152 - - csv:105436224 509.99