Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01154 ATGGGTGCCGACGGTGATTCCAGCGAGCACCGAGTTGATGCCGATGCTGAAGAAGGAGGAGTTAGTGTTACAGTTAACATTCGATGTTCTAATGGGTCGAAATTTTCCGTGACGACGAGTCTGGACTCTACAGTTGCAACATTCAAATCAATTCTTGCTCAGAATTGTGATATTCCAGCTGATCAGCAGCGCTTGATCTACAAGGGTCGCATCTTAAAGGACGATCAGACCTTAGTTAGTTATGGTTTACAGGCAGATCACACTATTCACATGGTTCGTGGTTTTGCCCAAGCTTCATCAACACCTTCTGCACCTGCTTCTAACGTTAATACTAGAAGTTCTGACACTGCTCCTGGAGTCACAAGAGGTGTTGGTTCTAATGAGAGTGGTGCTTTTGGAAATGGTGGCCTTGGTGCGTCATTATTTCCTGGACTGGGTTTCAATCCTCTTGGTGGAGGTGGAGCTGGACTTCCTGAGTTTGAGCAAGTGCAACAACAGTTGACTCAGAATCCAAACATGATGAGGGAAATAATGAACATGCCTGCAATACAGAATTTGATGAATAACCCTGACTTGATGCGAACCTTAATTATGAGCAATCCTCAGATGCGGGATATTATTGACAGGAACCCAGAGCTTGCTCATATACTAAATGACCCTGGTATCCTTCGACAGACATTAGAGGCTGCAAGGAATCCTGAACTCATGAGAGAGATGATGAGAAACACTGACAGAGCAATGAGTAACATTGAATCTTCTCCCGAGGGATTTAACATGCTGAGGCGGATGTATGAAAATGTCCAGGAGCCATTTCTAAATGCAACAACAATGGCTGGAAATGCTGGAAATGATTTGAGTTCAAATCCATTTGCTGCTCTCTTGGCAAACCAAGGAGGTGCACAAGCGAGGAATGAGTCCAATAATTCTTCAACTACAGGATCAGAAACAACAGGAAATGCTGCTCCTAATACAAATCCACTTCCTAATCCCTGGGGTAATAATGCTAGTGGAGGAACTCAGACCACAACCACACAGCCAACTCCAGCTGGTGATACAAGGGCTCCTGGTATTGGGGGTTTAGGAGGGGCTGGTCGTACAAATGTAGATCGTTTTGCTGGTGCTGTGCCAGACCCAGCTCAGTTGAATCAGTTTCTGCAAAACCCAGCTATTTCACAGATGATGCAGAGTCTGCTCTCCAATCCTCAGTATATGAATCAAATCCTCAATCTCAACCCACAGCTACGAAGTATGGTTGATATGAATCCTCAATTAAGAGAGATGATGCAAAATCCAGAGTTTGTTCGCCAGTTAACTAATCCTGAGATGATGCAGCAAATGCTATCAATTCAGCAGACCCTCCTCTCTACCTTAAATCGACAGCCATCATCTCAAGATGCTGCTCAAACAGGTGCTGCAGCAGGTGTCCCTAACACTGCTGGATTGGAGATGTTAATGAACCTGTTTGGTGGACTCGGTGCTGGCGGTTTGGCTGCTCCACACAATCCCAATGTACCCCCAGAAGAACTGTACGCAACTCAACTTTCACAGCTCCAAGAGATGGGTTTCTTCGACACTCAAGAGAACATCAGAGCTCTACGTGCTACTTCCGGGAACGTCCATGCTGCTGTGGAGCGACTGCTGGGAAATCTTGGGCAGTAA 1659 45.75 MGADGDSSEHRVDADAEEGGVSVTVNIRCSNGSKFSVTTSLDSTVATFKSILAQNCDIPADQQRLIYKGRILKDDQTLVSYGLQADHTIHMVRGFAQASSTPSAPASNVNTRSSDTAPGVTRGVGSNESGAFGNGGLGASLFPGLGFNPLGGGGAGLPEFEQVQQQLTQNPNMMREIMNMPAIQNLMNNPDLMRTLIMSNPQMRDIIDRNPELAHILNDPGILRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNAGNDLSSNPFAALLANQGGAQARNESNNSSTTGSETTGNAAPNTNPLPNPWGNNASGGTQTTTTQPTPAGDTRAPGIGGLGGAGRTNVDRFAGAVPDPAQLNQFLQNPAISQMMQSLLSNPQYMNQILNLNPQLRSMVDMNPQLREMMQNPEFVRQLTNPEMMQQMLSIQQTLLSTLNRQPSSQDAAQTGAAAGVPNTAGLEMLMNLFGGLGAGGLAAPHNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14832949 14837743 + MELO3C013259.2.1 Cme01g01154 318130

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01154 552 CDD UBA_PLICs 510 548 - -
Cme01g01154 552 Pfam UBA/TS-N domain 510 546 IPR015940 -
Cme01g01154 552 MobiDBLite consensus disorder prediction 297 350 - -
Cme01g01154 552 CDD Ubl_Dsk2p_like 23 95 - -
Cme01g01154 552 PRINTS Ubiquitin signature 54 74 IPR019956 -
Cme01g01154 552 PRINTS Ubiquitin signature 75 96 IPR019956 -
Cme01g01154 552 SUPERFAMILY Ubiquitin-like 22 107 IPR029071 -
Cme01g01154 552 SMART uba_6 510 548 IPR015940 -
Cme01g01154 552 SMART ubq_7 23 94 IPR000626 GO:0005515
Cme01g01154 552 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 505 549 IPR015940 -
Cme01g01154 552 ProSiteProfiles Ubiquitin domain profile. 23 92 IPR000626 GO:0005515
Cme01g01154 552 MobiDBLite consensus disorder prediction 297 371 - -
Cme01g01154 552 SMART CBM 411 446 IPR006636 -
Cme01g01154 552 SMART CBM 200 239 IPR006636 -
Cme01g01154 552 SMART CBM 378 407 IPR006636 -
Cme01g01154 552 SMART CBM 148 187 IPR006636 -
Cme01g01154 552 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 1 552 - -
Cme01g01154 552 MobiDBLite consensus disorder prediction 99 128 - -
Cme01g01154 552 SUPERFAMILY UBA-like 506 548 IPR009060 GO:0005515
Cme01g01154 552 MobiDBLite consensus disorder prediction 99 123 - -
Cme01g01154 552 Pfam Ubiquitin family 25 92 IPR000626 GO:0005515
Cme01g01154 552 PANTHER UBIQUILIN 1 552 - -
Cme01g01154 552 Gene3D - 492 551 - -
Cme01g01154 552 Gene3D - 195 253 - -
Cme01g01154 552 Gene3D - 9 107 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01154 K04523 UBQLN, DSK2; ubiquilin - csv:101210644 962.214
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01154 Cme-Chr1:14832949 Cme06g02341 Cme-Chr6:30769154 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g280 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme01g01154 . . . . Bpe15g00787 . . Bma08g00719 . . . Cma11g01337 . . . . . . . . . . . . . . . . . . . . . Chy01g00602 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005812 1 1 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 4 2 0 1 1 0 1 1 1 1 2 1 3 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01154 Cme_Chr01 FPKM 8.525097 10.027117 2.114457 2.498192 12.764831 13.384739 12.897793 0.342764 0.423612 0.450841