Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01176 ATGGTTGGCTTTCCTTCAACCAAGAGTACCAAATACCATACTCGCTCAAACAGCTTGCCATCCCGACCACACCCTCTCTTTTCACAATGTGATGAGCACTTGACTAGACTAAGAGATTATGAATCAACTCCTGCCTCATCAACATCCTCTATAAGCCAACAGCTAAGTGGCCTCGAGGATTTGCACGAATGTGTTGAAAAGTTACTTTTGGTACCCTCCATTCAAGAAGCTTTTGTTAGACATTGTGGAGAGAAATGGGTTGATGAGTTGTTGGATGGATCTCTTAGGCTGCTTGATATGTGCAGTTCAGCCAAGGATGCTTTGATCCACACAAAGGAATGTGTCCGTGAGCTTCGCTCTGCCATTCGACGAAGATCTGAGATGACAAATGAGATTAAGAAATACTTGGCCTCTAGAAAAGTTGTAAAGAGGGCAATCCAAAAGGCCCTTGATACTAATAAGAGCATCGAAAGAAAAAGCGACACAACAGTTGACGGTAACGACTATGACACTACAGCAATGGTTAGTTTGTTGAAGGAGGTGGAAGCAACTGGTCTTAGAATGTTTGAGTCCTTACTTTTCCTTATCTCAGGGAAGAAGACAAAGACAAAATCTAGTTGGTCAATTCTTAGTGTAATGAACAGCAAAAGAGAAGTCTGTCCTGAAGTAGATGCAGAATTCAATGAATTTTCCAATATGGATAATGCATTGAACTCTGTTATATGCCAAAAGACAAACAAATGCAAAGATACAACTCAAGTGTCTGAGAATGTCCAAAATCATCTTGAAAAGTTGGATCTAAGCACTCAAGATTTGGAACAAACAACTGAGCGCTTGTTTCGACGTTTGATCAAAACTAGAGTCTCCCTTCTCAACATCCTCAACAACTAG 891 40.74 MVGFPSTKSTKYHTRSNSLPSRPHPLFSQCDEHLTRLRDYESTPASSTSSISQQLSGLEDLHECVEKLLLVPSIQEAFVRHCGEKWVDELLDGSLRLLDMCSSAKDALIHTKECVRELRSAIRRRSEMTNEIKKYLASRKVVKRAIQKALDTNKSIERKSDTTVDGNDYDTTAMVSLLKEVEATGLRMFESLLFLISGKKTKTKSSWSILSVMNSKREVCPEVDAEFNEFSNMDNALNSVICQKTNKCKDTTQVSENVQNHLEKLDLSTQDLEQTTERLFRRLIKTRVSLLNILNN 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14977127 14978156 + MELO3C013286.2.1 Cme01g01176 318152

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01176 296 MobiDBLite consensus disorder prediction 1 24 - -
Cme01g01176 296 Coils Coil 258 278 - -
Cme01g01176 296 PANTHER BPS1-LIKE PROTEIN 9 295 - -
Cme01g01176 296 PANTHER DUF241 DOMAIN PROTEIN 9 295 - -
Cme01g01176 296 Pfam Protein BPS1 55 293 IPR004320 GO:0048364|GO:0048367
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01176 - - - csv:101210854 545.043
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01176 Cme-Chr1:14977127 Cme11g01223 Cme-Chr11:18623032 8.81E-87 dispersed
Cme08g00976 Cme-Chr8:6410885 Cme01g01176 Cme-Chr1:14977127 1.23E-44 dispersed
Cme08g00978 Cme-Chr8:6414466 Cme01g01176 Cme-Chr1:14977127 5.08E-49 dispersed
Cme01g01175 Cme-Chr1:14967070 Cme01g01176 Cme-Chr1:14977127 3.78E-64 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g244 . Blo15g00399 . . . . . Bma12g00903 Cmo19g00799 . . . . . Sed05g2188 . . Bhi05g01617 Tan02g0599 Cmetu01g2685 . . . . Cla02g00372 . . Cco02g0382 Clacu02g0371 Cmu02g0368 Cre02g0701 . . . Cone10ag1225 . Csa07g00160 . Cme01g01176 . . . . . . . . . . . Cma11g01348 . . . . . . . . . . . . . . . . . . . Lsi11g01261 . Chy01g00630 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014332 0 3 0 0 0 0 0 1 0 1 1 1 1 1 1 1 1 0 0 1 1 1 0 1 1 1 1 2 1 0 22
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01176 Cme_Chr01 FPKM 31.993559 32.043762 39.126461 36.531052 24.963667 24.333887 22.197016 46.339573 47.724442 42.968758