Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01180 ATGCCTTTCTTCCTCCTCCTTCTCTTCCTCTCCCTTTTCTCCTCAGCCACTGCTTGTGATCGTTGTATTCATCAAGCCAAAGCCGCCTTCTACCAAGACGAAGCCGCCGATAGAGGCGCTTGTGGCTATGGCGATCTTACATTACAGCTCTCAAATGGCTACTTCTCCGCCATTATGCCTCCTCTTTACAAGTATGGCGCTGGCTGTGGCGCTTGTTTTCAAGTAAGGTGCAAGAACGAGAAGATTTGTAGTAAAGAAGGGACGAAAATTATTGTAACGGATCGAAACGACAATACTTATACAGGATTGGTTCTTAGTCAGAAAGCTTTTGGTGAAATGGCTGTGAGTGGAAAAGATGGATTGCTTTTGAGTTACGGAGTTGTGGATGTTGAATTCAAGAGGATTCCTTGTGAATACAATAACTTAAACTTGATGGTTAGAGTAGAAGAATGGAGTCAATATCCAAATTACTTAGCTATTAAATTGCTTAACCAAGGTGGCCAAACCGAAATAGTAGCCATCGATATAGCTCAGGTTGGTTACTCGAATTGGGATTACATGGGTAGGAACTACGGTGCTGTGTGGGAGACTAAAAAACCAGCTCCAAAAGGACCATTGCAATTACGGTTCGTAGTTACTTCTGGATATGATGGCAAATATATTTGGGCTAAACACGTACTTCCTGCTGACTGGAGACCTGGACTAGTTTACGATACTGGAGTTCAAATCTACGACATTGCTAAAGAAGGTTGTCCAACAGAACAGTGTGGCGATGGACAATGGAAACGACGATAG 795 43.14 MPFFLLLLFLSLFSSATACDRCIHQAKAAFYQDEAADRGACGYGDLTLQLSNGYFSAIMPPLYKYGAGCGACFQVRCKNEKICSKEGTKIIVTDRNDNTYTGLVLSQKAFGEMAVSGKDGLLLSYGVVDVEFKRIPCEYNNLNLMVRVEEWSQYPNYLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPAPKGPLQLRFVVTSGYDGKYIWAKHVLPADWRPGLVYDTGVQIYDIAKEGCPTEQCGDGQWKRR 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15011431 15012966 - MELO3C013289.2.1 Cme01g01180 318156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01180 264 SUPERFAMILY Barwin-like endoglucanases 8 140 IPR036908 -
Cme01g01180 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 156 239 IPR007117 -
Cme01g01180 264 PANTHER EXPANSIN-B3 5 258 - -
Cme01g01180 264 PANTHER EXPANSIN-LIKE A1-RELATED 5 258 - -
Cme01g01180 264 Pfam Lytic transglycolase 58 131 IPR009009 -
Cme01g01180 264 Gene3D - 139 244 IPR036749 -
Cme01g01180 264 PRINTS Expansin/Lol pI family signature 37 55 IPR007118 GO:0005576
Cme01g01180 264 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576
Cme01g01180 264 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576
Cme01g01180 264 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Cme01g01180 264 PRINTS Expansin/Lol pI family signature 125 141 IPR007118 GO:0005576
Cme01g01180 264 PRINTS Major pollen allergen Lol pI signature 114 129 IPR005795 GO:0005576|GO:0019953
Cme01g01180 264 PRINTS Major pollen allergen Lol pI signature 163 178 IPR005795 GO:0005576|GO:0019953
Cme01g01180 264 PRINTS Major pollen allergen Lol pI signature 215 232 IPR005795 GO:0005576|GO:0019953
Cme01g01180 264 PRINTS Major pollen allergen Lol pI signature 57 68 IPR005795 GO:0005576|GO:0019953
Cme01g01180 264 PRINTS Major pollen allergen Lol pI signature 77 87 IPR005795 GO:0005576|GO:0019953
Cme01g01180 264 PRINTS Major pollen allergen Lol pI signature 147 162 IPR005795 GO:0005576|GO:0019953
Cme01g01180 264 SUPERFAMILY PHL pollen allergen 143 238 IPR036749 -
Cme01g01180 264 Pfam Expansin C-terminal domain 146 228 IPR007117 -
Cme01g01180 264 Gene3D - 11 138 IPR036908 -
Cme01g01180 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 38 142 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01180 Cme-Chr1:15011431 Cme01g01187 Cme-Chr1:15072172 2.49E-111 dispersed
Cme01g01180 Cme-Chr1:15011431 Cme01g01181 Cme-Chr1:15037302 6.43E-116 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01180 - - csv:101217243 528.094