Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01181 ATGGCTTGGTTTCTTGGTTTTCTCTTCCTCTATTTCATTTCTTCTGCTAATGCTTGCGATCGTTGTGTTTATCAATCCAAAGCTAGCCACCTTTATGATTCACCTACTACATATGGAGGAGCATGTGGTTATGGCAATGTGGCCTTGCAGTTCTCTAATGGCTACTTTGCAGCTGCTGTCCCTTCCCTTTACAGACAAGGAGTTGGTTGTGGTGCTTGCTATCAGGTGAGATGCAAAAACAGAAGGCTTTGTAACACCATAGGGACTAAAGTGGTGTTGACGGATCAAAATAATGATAATGCGACAGATCTTGTTCTTAGTAAAAGAGCTTTCTTTACAATGGCTCTAAATGGCAAAGGTGCAGACCTCTTGAATCTTGGAGTTGTTGATGTTGAATACAAGAGGGTGGCTTGTGAATACAAACATAAGAATTTGTTAGTGCAAGTGGAAGAATTTAGCTACAATCCATTTTACTTGGCAATTAAATTCTTGTACCAAGGTGGCCAAACAGACATGGTAGCTGTGGATATAGCTCAAGTAGGTACCTCAGAGTGGAGCCATATGAAGAGAAGTTATGGAGCTGTTTGGGAAATAAACAACATACCTGAAGGTTCATTACAATTGAGGATGGTTGTGACTTCTGGATATGATGGAAAATGGGTTTGGGCAAAGTCCGTACTTCCTGCTGATTGGAAAAGTGGAGCCATTTACGATACTGGAGTTCAGATCAACGACATTGCTAAAGAGAGTTGTCCTCCATGGCAATGTGGTGATAAACCATGGAAATAA 789 41.06 MAWFLGFLFLYFISSANACDRCVYQSKASHLYDSPTTYGGACGYGNVALQFSNGYFAAAVPSLYRQGVGCGACYQVRCKNRRLCNTIGTKVVLTDQNNDNATDLVLSKRAFFTMALNGKGADLLNLGVVDVEYKRVACEYKHKNLLVQVEEFSYNPFYLAIKFLYQGGQTDMVAVDIAQVGTSEWSHMKRSYGAVWEINNIPEGSLQLRMVVTSGYDGKWVWAKSVLPADWKSGAIYDTGVQINDIAKESCPPWQCGDKPWK 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15037302 15039124 - MELO3C013290.2.1 Cme01g01181 318157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01181 262 Pfam Expansin C-terminal domain 147 228 IPR007117 -
Cme01g01181 262 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Cme01g01181 262 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Cme01g01181 262 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576
Cme01g01181 262 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576
Cme01g01181 262 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576
Cme01g01181 262 SUPERFAMILY Barwin-like endoglucanases 11 142 IPR036908 -
Cme01g01181 262 Pfam Lytic transglycolase 58 133 IPR009009 -
Cme01g01181 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 143 IPR007112 -
Cme01g01181 262 PANTHER EXPANSIN-B3 5 257 - -
Cme01g01181 262 Gene3D - 140 244 IPR036749 -
Cme01g01181 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 239 IPR007117 -
Cme01g01181 262 PANTHER EXPANSIN-LIKE A1-RELATED 5 257 - -
Cme01g01181 262 SUPERFAMILY PHL pollen allergen 144 238 IPR036749 -
Cme01g01181 262 Gene3D - 13 139 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01181 Cme-Chr1:15037302 Cme01g01187 Cme-Chr1:15072172 3.21E-137 dispersed
Cme02g00792 Cme-Chr2:10132737 Cme01g01181 Cme-Chr1:15037302 2.72E-67 dispersed
Cme04g00065 Cme-Chr4:498019 Cme01g01181 Cme-Chr1:15037302 2.74E-61 dispersed
Cme01g01180 Cme-Chr1:15011431 Cme01g01181 Cme-Chr1:15037302 6.43E-116 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01181 - - csv:101209873 544.658