Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01184 ATGGCTTGGTTTTTTACCTTTCTTCTTTTCTTTCTTGTCTCTTCCGCTAATGCTTGTAATCGTTGTATTTCCCAATCTAAGGCAGCTCATTACTACGAGGATACTCCAACCTCATATGGAGGTGCATGTGGGTATGGAAATTTGGCCTTGGAAATGTCTAAAGGCTATTTTGCAGCCGCTGTCCCTTCTATCTATAGAGAAGGAATGGGTTGTGGTGCTTGCTACCAGATAAGATGCAAGAATGCAACATTATGTAACACAGTTGGGACCAAAGTAGTTTTGACAGATCAAAATTCCGATAACAGAACAGATTTTGTTGTTAGTAGAAAAGCATTTTCAGCTATGGCTTTAGATGGCAAAGGCCAACAACTTTTGAAAACTGGAATTGTTGATATTGAATACAAAAGGATACCTTGTGAATACAATAAAAATTTATTAATACAAGTAGTAGAATGGAGCCACAATCCATATTATTTGGCTATTAAATTCCTTTACCAAGGAGGCCAAACAGACATAACTGCAGTCAGTCTAGCATCTCAGGATGGTTCTGGAGATTGGCAGTACATGAAAAGAAACTATGGAGCTATTTGGGATACAAATAAAGTGCCAGAAGGAGCGATAAAGATGGTGGTGATTGTAGTTTCAGGTTACAAGAATGGAAGAGGGATAATGATAAATTATGCACTTCCTGCTGATTGGAAAAATGGAGAGATTTATGATACTGGAATTCAAATCAAAGATATTGCTACTGAAGCATGCAATCCTTGGAGATGTGGTGACCAACCATGGAATTAA 795 37.86 MAWFFTFLLFFLVSSANACNRCISQSKAAHYYEDTPTSYGGACGYGNLALEMSKGYFAAAVPSIYREGMGCGACYQIRCKNATLCNTVGTKVVLTDQNSDNRTDFVVSRKAFSAMALDGKGQQLLKTGIVDIEYKRIPCEYNKNLLIQVVEWSHNPYYLAIKFLYQGGQTDITAVSLASQDGSGDWQYMKRNYGAIWDTNKVPEGAIKMVVIVVSGYKNGRGIMINYALPADWKNGEIYDTGIQIKDIATEACNPWRCGDQPWN 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15047964 15049764 - MELO3C013292.2.1 Cme01g01184 318160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01184 264 SUPERFAMILY PHL pollen allergen 150 240 IPR036749 -
Cme01g01184 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 241 IPR007117 -
Cme01g01184 264 SUPERFAMILY Barwin-like endoglucanases 9 143 IPR036908 -
Cme01g01184 264 Pfam Lytic transglycolase 59 134 IPR009009 -
Cme01g01184 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Cme01g01184 264 Gene3D - 141 246 IPR036749 -
Cme01g01184 264 Pfam Expansin C-terminal domain 154 215 IPR007117 -
Cme01g01184 264 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576
Cme01g01184 264 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Cme01g01184 264 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576
Cme01g01184 264 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576
Cme01g01184 264 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576
Cme01g01184 264 PANTHER EXPANSIN-B3 5 256 - -
Cme01g01184 264 Gene3D - 12 140 IPR036908 -
Cme01g01184 264 PANTHER EXPANSIN-LIKE A1-RELATED 5 256 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01184 Cme-Chr1:15047964 Cme01g01186 Cme-Chr1:15062711 2.03E-130 dispersed
Cme01g01184 Cme-Chr1:15047964 Cme01g01185 Cme-Chr1:15057948 1.30E-62 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01184 - - csv:101207054 535.028