Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01185 ATGGCTCTCAGTGGTAAAGGTTCAGATCTTTTGAATCTTGGAGTGGTGGATGTTGAATATAAGAGGGTGCCATGTGAATATCCAAATTATAGGAATTTGTTGGTGAGAGTGGAAGAATCAAGCTACAACCCATTCAAATTGGCAATAAAATTTTTGTACCAAGGTGGGCAAACAGAGATGGTTGCTGTCGATATAGCTCAGGTTGGGACATCAGATTGGAGCCATATGAAGAGAAGTTACGGAGCTGTTTGGGAAACAGACAATGTACCTGAAGGTGCATTGCAGTTGAGGATGGTTGTGACTTCTGGATATGATGGAAAATGGGTTTGGGCAAAGTCTGTACTTCCTGCTAACTGGAGAGCTGGGGCGATTTACGATACTGGAGTTCAAATCAAGGACATTGCTAAAGAGAGTTGTCCTCCATGGCAATGTGGTGACAATCCATGGAAATGA 453 42.83 MALSGKGSDLLNLGVVDVEYKRVPCEYPNYRNLLVRVEESSYNPFKLAIKFLYQGGQTEMVAVDIAQVGTSDWSHMKRSYGAVWETDNVPEGALQLRMVVTSGYDGKWVWAKSVLPANWRAGAIYDTGVQIKDIAKESCPPWQCGDNPWK 150
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 15057948 15059532 - MELO3C013293.2.1 Cme01g01185 318161
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01185 150 SUPERFAMILY PHL pollen allergen 31 126 IPR036749 -
Cme01g01185 150 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 45 127 IPR007117 -
Cme01g01185 150 PANTHER EXPANSIN-B3 1 146 - -
Cme01g01185 150 PANTHER EXPANSIN-LIKE A1-RELATED 1 146 - -
Cme01g01185 150 PRINTS Expansin/Lol pI family signature 73 87 IPR007118 GO:0005576
Cme01g01185 150 PRINTS Expansin/Lol pI family signature 13 29 IPR007118 GO:0005576
Cme01g01185 150 PRINTS Expansin/Lol pI family signature 113 127 IPR007118 GO:0005576
Cme01g01185 150 Pfam Expansin C-terminal domain 35 116 IPR007117 -
Cme01g01185 150 Gene3D - 27 132 IPR036749 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01185 Cme-Chr1:15057948 Cme01g01187 Cme-Chr1:15072172 3.56E-76 dispersed
Cme01g01184 Cme-Chr1:15047964 Cme01g01185 Cme-Chr1:15057948 1.30E-62 tandem
Cme01g01185 Cme-Chr1:15057948 Cme01g01186 Cme-Chr1:15062711 1.52E-67 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01185 - - csv:101209628 303.908