Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01186 ATGTATTGGTTTTTCATTTTCCTCTTTTTGCTCGTCTCCTCGACTACAGCTTCTTTTCCACCCTGTAATCGTTGTGTTCATCAATCCACAGCTGCTTATTACTACGAAGATTCGCCTACTTCATGTAAAAGCTTTAATGGAGGTGCTTGTGGTTATGGAAATTTAGCATTGGAAATCTCTAAAGGGTATTTTGCAGCTGCTGTCCCTTCCCTTTACAAGGGAGGAGCAGGTTGTGGTGCTTGCTATCAGGTAAGATGCAAGGACAAATATCTATGTAATACAGCAGGCACTAAAATAGTTTTGACAGATCAAAATAATGATAATACAACAGATATTGTTCTTAGTAAGAAAGCTTTCTCTGCCATGGCTTTAAAAGGAAAAGCTCAACGACTCTTGAATACGGGACGTGTCGATGTAGAATACAAGAGGATACCTTGTGAATACAAGAATAAAAATCTATTGGTACAAGTGGTTGAATGGAGCCACAAACCATATTATTTGGCAATCAAATTCTTATATCAAGGTGGTCAAACTGACATACAAGCGGTCAACATAGCTAAGGTGGGTTTACCGAAATGGCGCCCAATGAAAAGAAACTATGGAGCTATTTGGGATATCAATGGTGTGCCTGAAGGAGGATTACAATTGAGAATGGTAGTGACTTCAAGATATGATAATGGAAAATGGATTTGGGCAGGTTCTGTGCTCCCATCTGGTTGGAAAAATGGAGAAATTTATGATACTGGAGTTCAAATTAATGATATTGCTTATGAATATTGCCCTCCTTGGCAATGTGGTGGTGATGGACAATGGAAATAA 819 38.71 MYWFFIFLFLLVSSTTASFPPCNRCVHQSTAAYYYEDSPTSCKSFNGGACGYGNLALEISKGYFAAAVPSLYKGGAGCGACYQVRCKDKYLCNTAGTKIVLTDQNNDNTTDIVLSKKAFSAMALKGKAQRLLNTGRVDVEYKRIPCEYKNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQAVNIAKVGLPKWRPMKRNYGAIWDINGVPEGGLQLRMVVTSRYDNGKWIWAGSVLPSGWKNGEIYDTGVQINDIAYEYCPPWQCGGDGQWK 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15062711 15064372 - MELO3C013294.2.1 Cme01g01186 318162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01186 272 Gene3D - 148 253 IPR036749 -
Cme01g01186 272 PANTHER EXPANSIN-LIKE A1-RELATED 6 266 - -
Cme01g01186 272 Gene3D - 14 147 IPR036908 -
Cme01g01186 272 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Cme01g01186 272 Pfam Lytic transglycolase 66 141 IPR009009 -
Cme01g01186 272 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Cme01g01186 272 PANTHER EXPANSIN-B3 6 266 - -
Cme01g01186 272 SUPERFAMILY PHL pollen allergen 158 247 IPR036749 -
Cme01g01186 272 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Cme01g01186 272 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Cme01g01186 272 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Cme01g01186 272 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Cme01g01186 272 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Cme01g01186 272 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 248 IPR007117 -
Cme01g01186 272 SUPERFAMILY Barwin-like endoglucanases 17 150 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01184 Cme-Chr1:15047964 Cme01g01186 Cme-Chr1:15062711 2.03E-130 dispersed
Cme01g01186 Cme-Chr1:15062711 Cme01g01189 Cme-Chr1:15102386 7.13E-118 dispersed
Cme01g01185 Cme-Chr1:15057948 Cme01g01186 Cme-Chr1:15062711 1.52E-67 tandem
Cme01g01186 Cme-Chr1:15062711 Cme01g01187 Cme-Chr1:15072172 2.58E-119 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01186 - - csv:101209383 541.191