Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01187 ATGGCTTGGTTCCTTAGCTTGTTCTTCTTCTTTCTTGTCTCTTTTGCTAATGCTTGTGATCGTTGTATTCATCGGTCTAAAGCTACTCATTATTATGGAGATTCACCTACTTCATATGGAGGAGCATGTGGTTATGGAGACTTGGCATTGGAATTTACCGATGGCTACTTTTCAGCTGCTGTACCTTCTCTCTACAAACAAGGAGCTGGGTGTGGAGCATGTTTTCAGGTAAGATGCAAAGACAAAAGACTATGCAATACAGCAGGGAGCAAAGTAGTATTGACAGATCAAAATTACGATAGCAGAGTAGATTTTGTTCTAAGTAGAAAAGCTTTTTCTGCCATGGCTTTAAAAGGAAAAGGTCAAGAGCTTTTGAATACTGGAATTGTGGATGTAGAATATAAGAGGATACCTTGTGGATACAAAAACAAAAACTTGGCTGTACGAGTTGAAGAATCAAGTTATAATCCAAATTATTTAGCTCTTAAACTTTTGTACCAAGGTGGCCAAACAGAGATTGTGGCTGTCGATATAGCTGAGGTTGGTTCATATGAATGGGTGAGCTTAAGAAGAAATTATGGAGCAGTCTGGGATACAAATAAAGTACCAAATGGAGCATTACAAATGAGAATGGCATTTACTTCAGGATACGACGGAAAATGGGTTTGGGCAGAATATGTTCTTCCTGTCGATTGGGAAGTTGGAGCCATATACGATACTGGAGTTCAAATTTACGACATTGCCAAAGAAGGTTGCCCAAGATCACAGTGTGGTGATAAACCATGGAAATGA 792 39.14 MAWFLSLFFFFLVSFANACDRCIHRSKATHYYGDSPTSYGGACGYGDLALEFTDGYFSAAVPSLYKQGAGCGACFQVRCKDKRLCNTAGSKVVLTDQNYDSRVDFVLSRKAFSAMALKGKGQELLNTGIVDVEYKRIPCGYKNKNLAVRVEESSYNPNYLALKLLYQGGQTEIVAVDIAEVGSYEWVSLRRNYGAVWDTNKVPNGALQMRMAFTSGYDGKWVWAEYVLPVDWEVGAIYDTGVQIYDIAKEGCPRSQCGDKPWK 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15072172 15074258 - MELO3C013295.2.1 Cme01g01187 318163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01187 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 240 IPR007117 -
Cme01g01187 263 PANTHER EXPANSIN-B3 5 259 - -
Cme01g01187 263 Pfam Expansin C-terminal domain 147 229 IPR007117 -
Cme01g01187 263 Gene3D - 14 139 IPR036908 -
Cme01g01187 263 PRINTS Major pollen allergen Lol pI signature 116 131 IPR005795 GO:0005576|GO:0019953
Cme01g01187 263 PRINTS Major pollen allergen Lol pI signature 149 164 IPR005795 GO:0005576|GO:0019953
Cme01g01187 263 PRINTS Major pollen allergen Lol pI signature 165 180 IPR005795 GO:0005576|GO:0019953
Cme01g01187 263 PRINTS Major pollen allergen Lol pI signature 216 233 IPR005795 GO:0005576|GO:0019953
Cme01g01187 263 SUPERFAMILY PHL pollen allergen 144 239 IPR036749 -
Cme01g01187 263 Gene3D - 141 245 IPR036749 -
Cme01g01187 263 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576
Cme01g01187 263 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Cme01g01187 263 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576
Cme01g01187 263 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576
Cme01g01187 263 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576
Cme01g01187 263 PANTHER EXPANSIN-LIKE A1-RELATED 5 259 - -
Cme01g01187 263 Pfam Lytic transglycolase 60 134 IPR009009 -
Cme01g01187 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Cme01g01187 263 SUPERFAMILY Barwin-like endoglucanases 8 143 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01180 Cme-Chr1:15011431 Cme01g01187 Cme-Chr1:15072172 2.49E-111 dispersed
Cme01g01181 Cme-Chr1:15037302 Cme01g01187 Cme-Chr1:15072172 3.21E-137 dispersed
Cme01g01185 Cme-Chr1:15057948 Cme01g01187 Cme-Chr1:15072172 3.56E-76 dispersed
Cme01g01187 Cme-Chr1:15072172 Cme01g01189 Cme-Chr1:15102386 1.47E-125 dispersed
Cme01g01186 Cme-Chr1:15062711 Cme01g01187 Cme-Chr1:15072172 2.58E-119 tandem
Cme01g01187 Cme-Chr1:15072172 Cme01g01188 Cme-Chr1:15077971 4.86E-116 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01187 - - csv:101206821 525.013