Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01189 ATGGATTCTTCGTTTATGATCTTTATTGGCTTTTTTGTTTTTACGATCTCTTTTGCTAATGCTTGTGATCGATGTATCCATCAATCTAAAGCTGCTTATTACTACAGTGATGATCCTATTCAATTGATTTTTAATGGAATGGATGGGGCATGTGGCTATGGTTCATTGGCAAATGAATCTTTCCATGGATACATTGCTGGTGCAGTGCCTTTGCTATACAAACAAGGAGCTGGTTGTGGTGTTTGCTTTCAAGTAAGGTGCAAGAACAAGAAGTTGTGCAGTCCAATAGGAGCTAAAATAGTTTTGACAGATCAAAATTATGATAATCGAACTGATTTTGTTCTTAGTAGAAAAGCTTTCTCAGGAATGGCTCGCTGGGGCATGGCTCAACAACTTTTGCAACTAGGAATGGTTGATATCGAATACAAGAGGGTACCTTGTGGATACAAAAACAAAAATTTGTTGGTGAGAATTGAAGAATGGAGCAACAAGCCTTACTACTTAGCCATGAAATTCCTTTACCAAGGTGGCCAGACAGAAATAAAATCAGTTGACATTGCTCAAGTTGGTCGTTCAGATTGGGAAGGTTTGAAGAGAAACTATGGAGCTATTTGGGATACAAGTAAAGTACCAGAAGGAGCATTGCAACTAAGACTTGTGGTGACTTCAGGATATGATAATGAGAATTGGATTTGGACAAATTATGAAATTCCTGCCGATTGGAAAAGTGGAGAAACTTATGACACAGGAATTCAAATTGAAGAGATTGCCAAAGAATCTTGCTCTCCAAGAGAATGTGGGGATAGAATATGGAAATGA 819 37.97 MDSSFMIFIGFFVFTISFANACDRCIHQSKAAYYYSDDPIQLIFNGMDGACGYGSLANESFHGYIAGAVPLLYKQGAGCGVCFQVRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSGMARWGMAQQLLQLGMVDIEYKRVPCGYKNKNLLVRIEEWSNKPYYLAMKFLYQGGQTEIKSVDIAQVGRSDWEGLKRNYGAIWDTSKVPEGALQLRLVVTSGYDNENWIWTNYEIPADWKSGETYDTGIQIEEIAKESCSPRECGDRIWK 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15102386 15104844 - MELO3C028718.2.1 Cme01g01189 318165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01189 272 SUPERFAMILY Barwin-like endoglucanases 12 151 IPR036908 -
Cme01g01189 272 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576
Cme01g01189 272 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576
Cme01g01189 272 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Cme01g01189 272 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Cme01g01189 272 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Cme01g01189 272 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 249 IPR007117 -
Cme01g01189 272 PANTHER EXPANSIN-LIKE A1-RELATED 10 264 - -
Cme01g01189 272 Gene3D - 149 253 IPR036749 -
Cme01g01189 272 SUPERFAMILY PHL pollen allergen 152 248 IPR036749 -
Cme01g01189 272 PANTHER EXPANSIN-B3 10 264 - -
Cme01g01189 272 Gene3D - 15 147 IPR036908 -
Cme01g01189 272 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 152 IPR007112 -
Cme01g01189 272 Pfam Lytic transglycolase 71 142 IPR009009 -
Cme01g01189 272 Pfam Expansin C-terminal domain 156 224 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01186 Cme-Chr1:15062711 Cme01g01189 Cme-Chr1:15102386 7.13E-118 dispersed
Cme01g01187 Cme-Chr1:15072172 Cme01g01189 Cme-Chr1:15102386 1.47E-125 dispersed
Cme01g01189 Cme-Chr1:15102386 Cme02g00831 Cme-Chr2:10839539 9.60E-107 dispersed
Cme01g01188 Cme-Chr1:15077971 Cme01g01189 Cme-Chr1:15102386 9.58E-118 tandem
Cme01g01189 Cme-Chr1:15102386 Cme01g01190 Cme-Chr1:15108368 3.53E-89 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01189 - - cmo:103490398 529.635