Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01207 ATGAACTTTGCTCCCCAAGTATCCATATCAAAGAAGGAAGAAGAAGAAGCACGTGTTCAAATATGGAAATACATATTTGGCTTTGTGGAAATGGCGATTGTAAAATGTGCAATAGAACTCAGAATAGGTGATACAATAGAAAGCCATGGAAGCCCCATGACACTCTCCCAATTATCCACAGCTTTAAATTGTTCTTCCTCACTTCTATACCGCATCTTGAGATTCTTAGTCCGACGTGGAATATTCAAACAAGAAATCACTGAAGAAAATGTCATAAGCTATGATCACACACCTTTGTCAAGGCTGCTTGCAAGTAGCAACAACAACAGCATGGCTCCACTTCTTTTATTGGAGAGCAGCCCCGTGATGTTGGCACCATGGCATAGGCTCAGTGCTCGAATTAAAGGCAATGGAGAAACCCCATTTGAGGCTGCTCATGGAAAAGATGTATGGAGCTTTGCAGCAGCTGATCCAATACACAACATAGTAATCAATGATGCTATGTCATGTACTGCTAGGGTTCATACTGTGCCAGCAATACTTGAAGATTGTCCACAGATTTTTGAAGGAATTGGAAGTTTAGTTGATGTGGGAGGAGGAAATGGAACTTGCTTGAGCATGATTGTTAAGGCTTTCCCTTGGATTAAAGGCATCAACTTTGATCTTCCACATGTCATTTCTTCTTCTCAACAATACATTGGTGTTGAACATGTTGGTGGAAATATGCTTGATTCCATTCCTAAGGCTGATGCTGCATTCATTATGTGGGTGCTACATGACTGGGATGATGAGACCTGTATCAAAATATTGAAGAACTGTAAAGAAGCAATTTCAGAAAAGAGAGGAAAAGTAATCATTGTAGAAGCAATTATTGAAGAAAGATCAGAGGAAGAAAACAATAATAATAATCTTGGGGATGTGGGATTAATGCTTGACATGGTGATGATGGCTCATACCGAAAATGGCAAAGAAAGAACAATCAAGGAATGGGGTAACGTTCTTCGTCAAGCTGGTTTTACTCGATACACCATCACACCTATTCGAGCTGTTCACTCTGTAATTCAGGGTTTCCTTTGA 1077 40.02 MNFAPQVSISKKEEEEARVQIWKYIFGFVEMAIVKCAIELRIGDTIESHGSPMTLSQLSTALNCSSSLLYRILRFLVRRGIFKQEITEENVISYDHTPLSRLLASSNNNSMAPLLLLESSPVMLAPWHRLSARIKGNGETPFEAAHGKDVWSFAAADPIHNIVINDAMSCTARVHTVPAILEDCPQIFEGIGSLVDVGGGNGTCLSMIVKAFPWIKGINFDLPHVISSSQQYIGVEHVGGNMLDSIPKADAAFIMWVLHDWDDETCIKILKNCKEAISEKRGKVIIVEAIIEERSEEENNNNNLGDVGLMLDMVMMAHTENGKERTIKEWGNVLRQAGFTRYTITPIRAVHSVIQGFL 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15280987 15283334 + MELO3C013313.2.1 Cme01g01207 318183

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01207 358 SUPERFAMILY Winged helix DNA-binding domain 12 107 IPR036390 -
Cme01g01207 358 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 22 358 IPR016461 GO:0008168
Cme01g01207 358 Pfam O-methyltransferase domain 127 339 IPR001077 GO:0008171
Cme01g01207 358 PANTHER 3'-HYDROXY-N-METHYL-(S)-COCLAURINE 4'-O-METHYLTRANSFERASE 2-LIKE 10 351 - -
Cme01g01207 358 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 108 354 IPR029063 -
Cme01g01207 358 Pfam Dimerisation domain 33 77 IPR012967 GO:0046983
Cme01g01207 358 Gene3D - 6 103 IPR036388 -
Cme01g01207 358 PANTHER O-METHYLTRANSFERASE 10 351 IPR016461 GO:0008168
Cme01g01207 358 PIRSF O-mtase 1 358 IPR016461 GO:0008168
Cme01g01207 358 Gene3D Vaccinia Virus protein VP39 104 356 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01207 K22588 ASMT; acetylserotonin O-methyltransferase, plant [EC:2.1.1.4] - csv:101218114 626.32
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme01g01207 Cme11g01172 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01202 Cme-Chr1:15231414 Cme01g01207 Cme-Chr1:15280987 2.45E-163 dispersed
Cme01g01203 Cme-Chr1:15250001 Cme01g01207 Cme-Chr1:15280987 2.83E-167 dispersed
Cme01g01207 Cme-Chr1:15280987 Cme11g01172 Cme-Chr11:17829136 1.54E-89 dispersed
Cme01g01207 Cme-Chr1:15280987 Cme01g01209 Cme-Chr1:15320037 8.84E-109 proximal
Cme01g01207 Cme-Chr1:15280987 Cme01g01210 Cme-Chr1:15329520 2.30E-51 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g226 . . . . . . . . Cmo19g00776 Cmo11g01762 . . . . . Cpe04g00615 . Bhi05g01656 Tan02g0632 . . . . . . . . . . . . Cone12ag1254 Cone8ag1309 . . . Csa07g00140 . Cme01g01207 . . . . . . . Bma08g00585 . . . . Cma19g00763 . . . . . . . . . . . . . . . . . . Lsi11g01240 . Chy01g00646 Cme11g01172
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000315 1 12 0 1 0 8 0 7 7 3 4 6 4 5 8 8 6 2 2 8 4 3 2 4 5 10 6 5 7 2 140
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01207 Cme_Chr01 FPKM 20.438738 22.047016 15.066272 16.020676 10.434184 9.093154 10.839299 26.315401 24.802782 24.306004