Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01209 ATGGAAGAAACTATCACCAAAGAATCAAAATGGAAGAAAGAAGAAGAAGAAGAAGCGAAGATCCAAATATACAAATACGTTTTTGGTTTTGCAGAAGCAGCCGTCATAAAATGCGCCATAGAGCTCAAAATCGCCAATGTCATTGAAAGCCATGGCAGACCAACAATGACACTTTCTCAACTATCCACCGCTTTAAATTGCTCTCCACCACTTTTGTTTCGCATAATGAGATTCCTCACCCATCGAGGAATTTTCAGAGAAGAAACCACACCTGAAAACCTCATAGCCTATTCTCAAACACCACTATCTCATATGCTCATTAATGTAGCTCCTTTACTTTTGCTTGAGAATAGCCCAGAAATTGTTGCATCATGGCACAATCTTAGTGCAAAGCTTAAGAATAGTTACAATAATAATGAAAATAGTGATTTAGTAGTGCCATTTGAAGTAGCTCATGGGAAGGATATTTGGAGTTATGGTGCAAGAAATCCAGGGTTTAATAGAATGTTTAATGAGGGATTGGGTTGTAATGCAAGGGTTATCACTTTGCCTGCGATACTTGAGAACTGTGGAGATATATTTAATGGAGTTGAGAGTTTGGTGGATGTGGGAGGAGGGAATGGGACTACTTTGAGTGTTTTGGTTAAGGCTTTTCCATGGATGAAAGGTATTAACTTTGATCTTCCAAATGTTGTGTCAACTTCAGAAAAGTATGATGGTGTGGAACATGTTGGTGGAAATATGCTTGATTTTGTTCCAAAGGCTGATGCTGCTTTCTTCATGCTTAAGTCTTTGGATCAATTGGTGATTGAGATAGTATATATTACAGCAAGTGGATTACTTGACGCTGACACATTGAAAAGCGTCAAGTAA 873 38.26 MEETITKESKWKKEEEEEAKIQIYKYVFGFAEAAVIKCAIELKIANVIESHGRPTMTLSQLSTALNCSPPLLFRIMRFLTHRGIFREETTPENLIAYSQTPLSHMLINVAPLLLLENSPEIVASWHNLSAKLKNSYNNNENSDLVVPFEVAHGKDIWSYGARNPGFNRMFNEGLGCNARVITLPAILENCGDIFNGVESLVDVGGGNGTTLSVLVKAFPWMKGINFDLPNVVSTSEKYDGVEHVGGNMLDFVPKADAAFFMLKSLDQLVIEIVYITASGLLDADTLKSVK 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15320037 15321220 - MELO3C013315.2.1 Cme01g01209 318185

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01209 290 Gene3D - 5 106 IPR036388 -
Cme01g01209 290 PANTHER O-METHYLTRANSFERASE 11 262 IPR016461 GO:0008168
Cme01g01209 290 Gene3D Vaccinia Virus protein VP39 107 268 IPR029063 -
Cme01g01209 290 Pfam Dimerisation domain 35 80 IPR012967 GO:0046983
Cme01g01209 290 SUPERFAMILY Winged helix DNA-binding domain 13 107 IPR036390 -
Cme01g01209 290 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 24 290 IPR016461 GO:0008168
Cme01g01209 290 PANTHER 3'-HYDROXY-N-METHYL-(S)-COCLAURINE 4'-O-METHYLTRANSFERASE 2-LIKE 11 262 - -
Cme01g01209 290 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 109 260 IPR029063 -
Cme01g01209 290 Pfam O-methyltransferase domain 125 260 IPR001077 GO:0008171
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01209 K22588 ASMT; acetylserotonin O-methyltransferase, plant [EC:2.1.1.4] - csv:101217081 476.863
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01209 Cme-Chr1:15320037 Cme11g01172 Cme-Chr11:17829136 1.90E-44 dispersed
Cme01g01207 Cme-Chr1:15280987 Cme01g01209 Cme-Chr1:15320037 8.84E-109 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g225 . . . . . . . . Cmo19g00774 . . . . . . . Cpe15g00616 Bhi05g01657 Tan02g0633 . . . . . . . . . . . . . . . . . Csa07g00139 . Cme01g01209 . . Bda15g01018 . . . . Bma08g00738 . . . Cma11g01356 Cma19g00762 . . . . . . . . . . . . . . . . . . Lsi11g01239 . Chy01g00647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000315 1 12 0 1 0 8 0 7 7 3 4 6 4 5 8 8 6 2 2 8 4 3 2 4 5 10 6 5 7 2 140
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01209 Cme_Chr01 FPKM 51.930515 58.253376 56.175781 62.020168 37.600815 37.978527 39.329773 125.420105 122.627731 111.907051