Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01214 ATGGCCTTCTCACTCATGGCCGCATCCTCTCTTAGTACCTCTTTTGGGAGAAAGACCCCTATTCGATGTTCTTCCTCTTCTTCCTCCGCTCTTTCTTCTCAAACCAAATCGCTTCACTTTGACCTAAAAACATACTGGAAACAGCTGATTCTCGAGATCAACCAAAAGCTGGATGAAGCTGTTCTAATTCAGTATCCAGAGCAGATCTACGAGGCTATGCGTTACTCCGTCTTGGCTCAAGGGGCCAAGCGAGCTCCTCCCGTTATGTGTGTCGCCGCCTGCGAGCTCTTCGGCGTCGACCGCCTCGCCGCTTTCCCCACCGCCTGTGCCCTCGAAATGGTTCATGAAGCTTCGTTGATCCATGATGACCTTCCTTGCATGGATGATGACCCCTCACGGCGTGGCCAACCCTCAAACCATACAGTTTATGGTGTTGACATGGCTATCCTTGCAGGTGATGCACTTTTCCCCCTTGGCTTCCAACATATTGTCTCACATACACCCTTTGATCTTGTGCCTGAGTCCCGCCTGCTCCGTGTGGTTGCCGAGATTGCCCGAGCCGTTGGTTCCAGAGGCATGGCAGCTGGACAGTTTCTTGACCTTGAGGGAGGCCCCAACTCCGTTGAATTTGTCCAAGAAAAAAAATTTGGTGAAATGGCCCAGTGCTCTGCAGTGTGTGGAGGACTTCTAGCTGGAGCAGAAGACCCTGAGATACAGAGACTAAGAAGATACGGAAGAGCGGTCGGGGTGTTGTATCAGGTAGTTGATGATATTTTGGAAGAACAATCGAAAAAACTCGATGAAACAAATGAGAGTAAAAGAAGAAAAGGGAAGAGCTACGTTGGAGTATATGGGATTGAGAAAGCTAAGGAGGTGGCGGAGGAGCTGAGGACCAAAGCTAAGAATGAATTGGAAGGATTTGAAAAGTACGGAGACCGAGTGATGCCTTTGTACAGCTTTGTGGACTATGCTGCTGATAGGAGCTTCAGTTTTGAAACTTCAAGTTGA 1008 49.11 MAFSLMAASSLSTSFGRKTPIRCSSSSSSALSSQTKSLHFDLKTYWKQLILEINQKLDEAVLIQYPEQIYEAMRYSVLAQGAKRAPPVMCVAACELFGVDRLAAFPTACALEMVHEASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRVVAEIARAVGSRGMAAGQFLDLEGGPNSVEFVQEKKFGEMAQCSAVCGGLLAGAEDPEIQRLRRYGRAVGVLYQVVDDILEEQSKKLDETNESKRRKGKSYVGVYGIEKAKEVAEELRTKAKNELEGFEKYGDRVMPLYSFVDYAADRSFSFETSS 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15362667 15365174 - MELO3C013320.2.1 Cme01g01214 318190

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01214 335 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 17 330 - -
Cme01g01214 335 SFLD Isoprenoid Synthase Type I 70 311 - -
Cme01g01214 335 PANTHER HETERODIMERIC GERANYLGERANYL PYROPHOSPHATE SYNTHASE SMALL SUBUNIT, CHLOROPLASTIC 17 330 - -
Cme01g01214 335 Pfam Polyprenyl synthetase 67 265 IPR000092 GO:0008299
Cme01g01214 335 ProSitePatterns Polyprenyl synthases signature 1. 119 135 IPR033749 -
Cme01g01214 335 Gene3D Farnesyl Diphosphate Synthase 39 335 IPR008949 -
Cme01g01214 335 CDD Trans_IPPS_HT 66 327 IPR000092 GO:0008299
Cme01g01214 335 Coils Coil 286 306 - -
Cme01g01214 335 SUPERFAMILY Terpenoid synthases 43 308 IPR008949 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01214 K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] - csv:101213533 614.764
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01025 Cme-Chr1:12653623 Cme01g01214 Cme-Chr1:15362667 1.42E-33 dispersed
Cme01g01214 Cme-Chr1:15362667 Cme08g00499 Cme-Chr8:3079100 3.18E-76 dispersed
Cme01g01214 Cme-Chr1:15362667 Cme11g00220 Cme-Chr11:2584578 1.59E-77 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g222 . . . . . . . . . . . . . . . . . Bhi05g01664 Tan02g0638 . . Hepe02g0397 . . Cla02g00399 Cam02g0404 Cec02g0404 Cco02g0419 Clacu02g0407 Cmu02g0403 Cre02g0737 Cone12ag1252 Cone8ag1307 . . . Csa07g00134 . Cme01g01214 . . Bda15g01019 . Bpe15g00796 . . Bma08g00739 . . . Cma11g01358 . Car11g01391 . . . . . . . . . . . . . . . . . Lsi11g01228 . Chy01g00652 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006949 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 3 1 1 1 2 1 2 2 1 2 2 3 0 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01214 Cme_Chr01 FPKM 42.272606 41.905819 14.807302 14.947731 8.828141 10.314396 10.21302 64.21756 67.508385 66.631233