Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme01g01218 | ATGACGAACTATGGGTTCACTTCAATCGTCTTCCCACTCGATCCAATGCTATGCAGATATGCTCTAGACGTAAATGTGGAGAGGGCAGAAGATGTTCTCATGCATAAAAGATTATTGCAATTCGCTCACGATCCTGCAAATCGACCTGCAATTGAAGTCCGACTAGTGCAGGTCCAAGCCGTTTCTGATGAGCATTCTGCTGACGTTGCTGATTCATGTCCTGTAAAAGACACTGATCATAATTCTGCAAATTTCTTGGGCAGACAGAGCGTGCATCCACCACCTGCCTTTGGGTCATCTCCTAACCTCGAGGCCTTGGCTCTTGAAGCTAATACTCAAGATCTGGAGGTCGATCAGTCTGTACATGCCAGAACACAGTTTTTCCGGCCAATGCATGAAATCACCTTCTCTACGGATGATAAGCCGAAACTTCTTAGTCAGTTGACTTCCTTGCTTGCGGAGATTGGGCTGAACATCCAGGAGGCACATGCATTTTCCACTGTTGATGGTTACTCATTGGATGTTTTTGTAGTTGATGGTTGGCCCTATGAGGAAACAGAGCGGCTGAAGACTGCATTAGAGAAGGAAGTTTTACTGGTTGAGAGGCGAGGTTGGCCAAATCATAAATCCTCGTCTCCTGTGGGGGAACTCGATATAACAACTAAATGTGAGCCTGATCGGGTAGAAATACCCACCGATGGGACTGATGTATGGGAAATTAATCCTAGACATTTGAAGTTTGAGCATAAAGTTGCATCTGGTTCATATGGGGATCTGTATAAAGGTACATACTGCAGTCAGGAAGTGGCTATTAAAGTTCTCAAAACTGAACGTGTAAATACTGATATGCAAAGTGAGTTTGCCCAGGAGGTATATATTATGAGAAAAGTAAGGCACAAAAATGTCGTACAGTTTATAGGTGCATGTACTAAGCCCCCAAGCTTGTGCATTGTAACAGAATTTATGTCTGGTGGTAGTGTCTATGACTATCTACATAAACAAAAGGGAACTTTTAGGCTTCCATCTTTGCTTAAGGTAGCCATTGATGTCTCCAAGGGAATGAACTATTTGCACCAAAATAATATAATTCACAGAGATCTAAAAGCTGCCAATCTTCTGATGGATGAAAATGAAGTTGTCAAGGTTGCCGATTTCGGTGTGGCCAGAGTAAAAGCTCAATCAGGAGTTATGACCGCAGAAACTGGGACATATCGGTGGATGGCTCCTGAGGTTATTGAACATAAACCCTATGATCACAAGGCTGATGTTTTCAGTTTTGGAATTGTCTTGTGGGAGCTGCTAACCGGAAAGCTACCTTATGAATTCCTAACACCATTACAAGCCGCAGTTGGAGTAGTACAAAAGGGTTTACGGCCTACTATTCCTAAGCACACTAATCCCAAGCTAGCCGACTTGCTAGAAAAATGTTGGCAGCAAGACCCATCTTGCAGGCCCGACTTTTGTGAAATTATCGATATATTGTTGCAGATAACTAAAGAAGTTGCTGAAGAGGGTGAGGATCGAAGAAAGGAGAAAAGTGGAGGATTCCTTTCTGTGTTGAGACGAAACCATCACTGA | 1578 | 43.22 | MTNYGFTSIVFPLDPMLCRYALDVNVERAEDVLMHKRLLQFAHDPANRPAIEVRLVQVQAVSDEHSADVADSCPVKDTDHNSANFLGRQSVHPPPAFGSSPNLEALALEANTQDLEVDQSVHARTQFFRPMHEITFSTDDKPKLLSQLTSLLAEIGLNIQEAHAFSTVDGYSLDVFVVDGWPYEETERLKTALEKEVLLVERRGWPNHKSSSPVGELDITTKCEPDRVEIPTDGTDVWEINPRHLKFEHKVASGSYGDLYKGTYCSQEVAIKVLKTERVNTDMQSEFAQEVYIMRKVRHKNVVQFIGACTKPPSLCIVTEFMSGGSVYDYLHKQKGTFRLPSLLKVAIDVSKGMNYLHQNNIIHRDLKAANLLMDENEVVKVADFGVARVKAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGKLPYEFLTPLQAAVGVVQKGLRPTIPKHTNPKLADLLEKCWQQDPSCRPDFCEIIDILLQITKEVAEEGEDRRKEKSGGFLSVLRRNHH | 525 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 15398386 | 15406886 | + | MELO3C013322.2.1 | Cme01g01218 | 318194 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme01g01218 | 525 | CDD | ACT_TyrKc | 131 | 198 | - | - | |
Cme01g01218 | 525 | Gene3D | Phosphorylase Kinase; domain 1 | 235 | 323 | - | - | |
Cme01g01218 | 525 | Gene3D | Transferase(Phosphotransferase) domain 1 | 324 | 518 | - | - | |
Cme01g01218 | 525 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 362 | 374 | IPR008271 | GO:0004672|GO:0006468 | |
Cme01g01218 | 525 | CDD | STKc_MAP3K-like | 251 | 494 | - | - | |
Cme01g01218 | 525 | PRINTS | Tyrosine kinase catalytic domain signature | 319 | 332 | IPR001245 | GO:0004672|GO:0006468 | |
Cme01g01218 | 525 | PRINTS | Tyrosine kinase catalytic domain signature | 356 | 374 | IPR001245 | GO:0004672|GO:0006468 | |
Cme01g01218 | 525 | PRINTS | Tyrosine kinase catalytic domain signature | 402 | 412 | IPR001245 | GO:0004672|GO:0006468 | |
Cme01g01218 | 525 | PRINTS | Tyrosine kinase catalytic domain signature | 421 | 443 | IPR001245 | GO:0004672|GO:0006468 | |
Cme01g01218 | 525 | PRINTS | Tyrosine kinase catalytic domain signature | 465 | 487 | IPR001245 | GO:0004672|GO:0006468 | |
Cme01g01218 | 525 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 17 | 508 | - | - | |
Cme01g01218 | 525 | PANTHER | SERINE/THREONINE-PROTEIN KINASE STY46-LIKE ISOFORM X1 | 17 | 508 | - | - | |
Cme01g01218 | 525 | Pfam | Protein tyrosine and serine/threonine kinase | 245 | 493 | IPR001245 | GO:0004672|GO:0006468 | |
Cme01g01218 | 525 | SUPERFAMILY | ACT-like | 131 | 195 | IPR045865 | - | |
Cme01g01218 | 525 | Coils | Coil | 183 | 203 | - | - | |
Cme01g01218 | 525 | SMART | serkin_6 | 245 | 495 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme01g01218 | 525 | ProSiteProfiles | Protein kinase domain profile. | 245 | 495 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme01g01218 | 525 | SUPERFAMILY | Protein kinase-like (PK-like) | 230 | 494 | IPR011009 | - | |
Cme01g01218 | 525 | ProSiteProfiles | ACT domain profile. | 133 | 205 | IPR002912 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme01g01218 | Cme-Chr1:15398386 | Cme06g02352 | Cme-Chr6:30841256 | 0 | dispersed | |
Cme06g02199 | Cme-Chr6:28148651 | Cme01g01218 | Cme-Chr1:15398386 | 2.69E-07 | dispersed | |
Cme12g01838 | Cme-Chr12:24732892 | Cme01g01218 | Cme-Chr1:15398386 | 1.12E-65 | dispersed | |
Cme01g01218 | Cme-Chr1:15398386 | Cme08g00296 | Cme-Chr8:1888947 | 1.37E-75 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64610 | PF07714 | PK_Tyr_Ser-Thr | 2.90E-74 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme01g01218 | - | - | csv:101213048 | 1003.05 |