Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01218 ATGACGAACTATGGGTTCACTTCAATCGTCTTCCCACTCGATCCAATGCTATGCAGATATGCTCTAGACGTAAATGTGGAGAGGGCAGAAGATGTTCTCATGCATAAAAGATTATTGCAATTCGCTCACGATCCTGCAAATCGACCTGCAATTGAAGTCCGACTAGTGCAGGTCCAAGCCGTTTCTGATGAGCATTCTGCTGACGTTGCTGATTCATGTCCTGTAAAAGACACTGATCATAATTCTGCAAATTTCTTGGGCAGACAGAGCGTGCATCCACCACCTGCCTTTGGGTCATCTCCTAACCTCGAGGCCTTGGCTCTTGAAGCTAATACTCAAGATCTGGAGGTCGATCAGTCTGTACATGCCAGAACACAGTTTTTCCGGCCAATGCATGAAATCACCTTCTCTACGGATGATAAGCCGAAACTTCTTAGTCAGTTGACTTCCTTGCTTGCGGAGATTGGGCTGAACATCCAGGAGGCACATGCATTTTCCACTGTTGATGGTTACTCATTGGATGTTTTTGTAGTTGATGGTTGGCCCTATGAGGAAACAGAGCGGCTGAAGACTGCATTAGAGAAGGAAGTTTTACTGGTTGAGAGGCGAGGTTGGCCAAATCATAAATCCTCGTCTCCTGTGGGGGAACTCGATATAACAACTAAATGTGAGCCTGATCGGGTAGAAATACCCACCGATGGGACTGATGTATGGGAAATTAATCCTAGACATTTGAAGTTTGAGCATAAAGTTGCATCTGGTTCATATGGGGATCTGTATAAAGGTACATACTGCAGTCAGGAAGTGGCTATTAAAGTTCTCAAAACTGAACGTGTAAATACTGATATGCAAAGTGAGTTTGCCCAGGAGGTATATATTATGAGAAAAGTAAGGCACAAAAATGTCGTACAGTTTATAGGTGCATGTACTAAGCCCCCAAGCTTGTGCATTGTAACAGAATTTATGTCTGGTGGTAGTGTCTATGACTATCTACATAAACAAAAGGGAACTTTTAGGCTTCCATCTTTGCTTAAGGTAGCCATTGATGTCTCCAAGGGAATGAACTATTTGCACCAAAATAATATAATTCACAGAGATCTAAAAGCTGCCAATCTTCTGATGGATGAAAATGAAGTTGTCAAGGTTGCCGATTTCGGTGTGGCCAGAGTAAAAGCTCAATCAGGAGTTATGACCGCAGAAACTGGGACATATCGGTGGATGGCTCCTGAGGTTATTGAACATAAACCCTATGATCACAAGGCTGATGTTTTCAGTTTTGGAATTGTCTTGTGGGAGCTGCTAACCGGAAAGCTACCTTATGAATTCCTAACACCATTACAAGCCGCAGTTGGAGTAGTACAAAAGGGTTTACGGCCTACTATTCCTAAGCACACTAATCCCAAGCTAGCCGACTTGCTAGAAAAATGTTGGCAGCAAGACCCATCTTGCAGGCCCGACTTTTGTGAAATTATCGATATATTGTTGCAGATAACTAAAGAAGTTGCTGAAGAGGGTGAGGATCGAAGAAAGGAGAAAAGTGGAGGATTCCTTTCTGTGTTGAGACGAAACCATCACTGA 1578 43.22 MTNYGFTSIVFPLDPMLCRYALDVNVERAEDVLMHKRLLQFAHDPANRPAIEVRLVQVQAVSDEHSADVADSCPVKDTDHNSANFLGRQSVHPPPAFGSSPNLEALALEANTQDLEVDQSVHARTQFFRPMHEITFSTDDKPKLLSQLTSLLAEIGLNIQEAHAFSTVDGYSLDVFVVDGWPYEETERLKTALEKEVLLVERRGWPNHKSSSPVGELDITTKCEPDRVEIPTDGTDVWEINPRHLKFEHKVASGSYGDLYKGTYCSQEVAIKVLKTERVNTDMQSEFAQEVYIMRKVRHKNVVQFIGACTKPPSLCIVTEFMSGGSVYDYLHKQKGTFRLPSLLKVAIDVSKGMNYLHQNNIIHRDLKAANLLMDENEVVKVADFGVARVKAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGKLPYEFLTPLQAAVGVVQKGLRPTIPKHTNPKLADLLEKCWQQDPSCRPDFCEIIDILLQITKEVAEEGEDRRKEKSGGFLSVLRRNHH 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15398386 15406886 + MELO3C013322.2.1 Cme01g01218 318194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01218 525 CDD ACT_TyrKc 131 198 - -
Cme01g01218 525 Gene3D Phosphorylase Kinase; domain 1 235 323 - -
Cme01g01218 525 Gene3D Transferase(Phosphotransferase) domain 1 324 518 - -
Cme01g01218 525 ProSitePatterns Serine/Threonine protein kinases active-site signature. 362 374 IPR008271 GO:0004672|GO:0006468
Cme01g01218 525 CDD STKc_MAP3K-like 251 494 - -
Cme01g01218 525 PRINTS Tyrosine kinase catalytic domain signature 319 332 IPR001245 GO:0004672|GO:0006468
Cme01g01218 525 PRINTS Tyrosine kinase catalytic domain signature 356 374 IPR001245 GO:0004672|GO:0006468
Cme01g01218 525 PRINTS Tyrosine kinase catalytic domain signature 402 412 IPR001245 GO:0004672|GO:0006468
Cme01g01218 525 PRINTS Tyrosine kinase catalytic domain signature 421 443 IPR001245 GO:0004672|GO:0006468
Cme01g01218 525 PRINTS Tyrosine kinase catalytic domain signature 465 487 IPR001245 GO:0004672|GO:0006468
Cme01g01218 525 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 17 508 - -
Cme01g01218 525 PANTHER SERINE/THREONINE-PROTEIN KINASE STY46-LIKE ISOFORM X1 17 508 - -
Cme01g01218 525 Pfam Protein tyrosine and serine/threonine kinase 245 493 IPR001245 GO:0004672|GO:0006468
Cme01g01218 525 SUPERFAMILY ACT-like 131 195 IPR045865 -
Cme01g01218 525 Coils Coil 183 203 - -
Cme01g01218 525 SMART serkin_6 245 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01218 525 ProSiteProfiles Protein kinase domain profile. 245 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01218 525 SUPERFAMILY Protein kinase-like (PK-like) 230 494 IPR011009 -
Cme01g01218 525 ProSiteProfiles ACT domain profile. 133 205 IPR002912 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01218 Cme-Chr1:15398386 Cme06g02352 Cme-Chr6:30841256 0 dispersed
Cme06g02199 Cme-Chr6:28148651 Cme01g01218 Cme-Chr1:15398386 2.69E-07 dispersed
Cme12g01838 Cme-Chr12:24732892 Cme01g01218 Cme-Chr1:15398386 1.12E-65 dispersed
Cme01g01218 Cme-Chr1:15398386 Cme08g00296 Cme-Chr8:1888947 1.37E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64610 PF07714 PK_Tyr_Ser-Thr 2.90E-74 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01218 - - csv:101213048 1003.05