Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01219 ATGGATACGCTCAAGAAATCTTTCAAAGGCAATGTATCTTTCAAGCATACAAGGAAGATTTCTGCTGGAGGAGTCAGCAGCGAAATCAATCACGAAGAGCTCCCCATTCTTCTCAATCACCAATCTACGGATCATCACCTGGTGAACGATTCTGATCCGTCTGACCGAACAGAGGTCATTCTCAAGATTGATGATGGTGGTTCTTCAGCTGTCTCCAGATCTCTGGACTCTGTTGCCAATAATGGCGGGAAGGTTTGGCGGGAATCCAGGTACGATTTCTGGAACAATGATGAAACTGGAATTGGGGAAAGTGCGAGTAGGGTTCGTGGTGCGAGAATGAGTGATAGTGGTGATGATGGAAATGAGGGATTTCAATTTGTACAGACTGGTTATGGAATGGAGGATCCACCTACGAAGCTGATTGGTGACTTTCTTCATAAGCAGAAAATTAGGGGAGAAACGACTTTGGATATGGATTTGGAAATGGAGGAATTGAAGCCTAATAGGATTATACCTCCATTGGCAGAGTCGCCGTTGAGTCAAACTTCTAAGGATCTTAAAGTTTCGTTTCAGCAGGATTCGACAGAAATTTCGAGCAATGATCAGTCAATGAGAAGGCGGTATAGAGATTCTCATGATTTGAAAGAAGAGTTTAAAGGAGAACAACCGCCATGGCAACAATCGCACCATGAACGTCTTGGATCTCCAACTATCTCTGGGGTTCAGAATGAGTCTCTTGCTGAGGCTATGAGATGCGCATCTAACTTGTCCTTTCATAGTGAGCTTTCGTTTCAAAGGAAGTCTAATTTACTGAGGGCGAAAACCAAGTCAAGATTGACAGACCCACCTGCCGAGCCTGACCGGCTCTCTGGCCTCATTCCTAAGTCAGGTCAACTACGATCTGGGTTTCTGGGGAAGATTGAAGACGACGACGATGACCCCTTTCTAGAGGATGACCTTCCAGACGATTTTAAAAGGGGAAATTTCACTGCTCTAACTGTTCTACAATGGTTTAGTTTGATTCTAATCACTGCAGCTTTTATCTGCACTCTTTCTGTTCCTTATTTGAGGGAAAAGAGTCTATGGGAGTTGGATATATGGAAATGGGAGGTGATGATTTTGATACTGATTTGTGGACGATTGGTATCTGGTTGGGGGATTAGGATTGCTGTATTTTTCATTGAGAGGAATTTCCTTTTGCGTAAAAGGGTTCTGTATTTTGTATATGGGGTTAGAAAGCCAGTGCAGAATTGTTTATGGTTAGGCCTTGTTTTGATCGCTTGGCATTTGTTGTTCAATAAACGGGTTGAGAAACAAACCAACACCAGTATACTCAATTATGTGAGCAGAGTTTTAGTTTGTCTCTTGATAAGCACACTGATATGGCTTGTGAAAACCTTGATGGTTAAGGTGCTTGCCTCTTCTTTCCATGTAAGCACATACTTCGATCGAATTCAGGAATCGTTGTTTAATCAATATGTCATTGAGACGCTCTCGGGGCCACCTCTGGTTGAAATACGGAAGAATGAGGAAGAAGAGGAGAGGATTGCAGATGAAGTTCAAAAATTGCAGAATGCAGGGCTGACCATACCCCCTGATCTCAAGGCAACCTTTGCTTCTATAAAGAGTGGAAGGGCAATAAGTAGTGAACGGACCCACAAAAGTTTTTGCGCAAAAAGTTCCAAATTCTCTCGAGCACTGACTAAAAATGGGAACGATGGAATAACGATTGACCACTTGCACAAACTAAGTCCGAAGAACGTGTCTGCCTGGAATATGAAGAGGTTGTTGAACATAGTTCGATATGGTAGTATTTCCACACTGGACGAGCAGATACGGGGGCCGTGTCTTGATGATGAATCTACTACAGAGATCAAAAGTGAACGCGAGGCAAAGGCTGCAGCAAAAAAGATTTTTCAGAATGTGGCTCGTCGTGGATATAAGTACATATACCTGGATGACTTAATGCGGTTCATGAGAGAAGACGAGGTTCTTAAAACGACGAGTCTCTTTGAAGGAGCCGCTGAAAACCGGAGGATAAGCAAATCTGTCTTGAAAAATTGGGTGGTCAATGTCTTCAGGGAACGAAGAGCCCTTGCTTTAACACTGAATGATACCAAAACAGCTGTGGATAAACTACATCACATGGTGAATGTCATATTCGGCATCCTTATATTAATTTTATGGCTTATAGTATTAGGAATTGCCTCCAGCAAATTTTTCATCTTCCTTAGTTCTCAAATAGTGGTTGTGGCATTTATTTTTGGAAACACTTGCAAAACCATATTTGAAGCAATCATCTTTTTGTTTGTCATGCATCCATTTGACGTTGGAGATCGCTGCGAAATCGATGGAACGCAGATGGTTGTGGAGGAAATGAACATCTTGACTACTGTATTCTTGAGATACGACAACTTGAAGATTATAATCCCAAATAGCGTTCTTGCAACCAAATTAATCCACAACTTCTACCGTAGTCCTGACATGGGCGAATCGGTTGAATTCTTTGTCCATATCGCTACACCAGCTGAGAAAATTACGGCCATGAAACAGAGAATTATAAGTTACATTGAAGGCAACAAAGAACATTGGTGTCCTGCCCCTATGATTGTGTTCAAGGATATAGATGGTTTAAACAAGCTCAAATTGGCAGTTTGGTTGTCACACAGAATGAACCATCAAGACTCAGCGGAAAGATGGGCTCGGAGGTCCGTCTTGGTCGAAGAAGTTGTTAAAGTCTGTCAAGAGCTCGATATTCAATATCGTCTATTGCCGATTGATATCAATATCCGTTCATTGCCTTCTTCTGCACCCTCCATTGGCTTTCCTTCAAATTGGACTTCCCCTGCAAGTTGA 2856 42.33 MDTLKKSFKGNVSFKHTRKISAGGVSSEINHEELPILLNHQSTDHHLVNDSDPSDRTEVILKIDDGGSSAVSRSLDSVANNGGKVWRESRYDFWNNDETGIGESASRVRGARMSDSGDDGNEGFQFVQTGYGMEDPPTKLIGDFLHKQKIRGETTLDMDLEMEELKPNRIIPPLAESPLSQTSKDLKVSFQQDSTEISSNDQSMRRRYRDSHDLKEEFKGEQPPWQQSHHERLGSPTISGVQNESLAEAMRCASNLSFHSELSFQRKSNLLRAKTKSRLTDPPAEPDRLSGLIPKSGQLRSGFLGKIEDDDDDPFLEDDLPDDFKRGNFTALTVLQWFSLILITAAFICTLSVPYLREKSLWELDIWKWEVMILILICGRLVSGWGIRIAVFFIERNFLLRKRVLYFVYGVRKPVQNCLWLGLVLIAWHLLFNKRVEKQTNTSILNYVSRVLVCLLISTLIWLVKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLVEIRKNEEEEERIADEVQKLQNAGLTIPPDLKATFASIKSGRAISSERTHKSFCAKSSKFSRALTKNGNDGITIDHLHKLSPKNVSAWNMKRLLNIVRYGSISTLDEQIRGPCLDDESTTEIKSEREAKAAAKKIFQNVARRGYKYIYLDDLMRFMREDEVLKTTSLFEGAAENRRISKSVLKNWVVNVFRERRALALTLNDTKTAVDKLHHMVNVIFGILILILWLIVLGIASSKFFIFLSSQIVVVAFIFGNTCKTIFEAIIFLFVMHPFDVGDRCEIDGTQMVVEEMNILTTVFLRYDNLKIIIPNSVLATKLIHNFYRSPDMGESVEFFVHIATPAEKITAMKQRIISYIEGNKEHWCPAPMIVFKDIDGLNKLKLAVWLSHRMNHQDSAERWARRSVLVEEVVKVCQELDIQYRLLPIDINIRSLPSSAPSIGFPSNWTSPAS 951
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15415621 15420150 + MELO3C013323.2.1 Cme01g01219 318195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01219 951 Gene3D - 774 823 IPR023408 -
Cme01g01219 951 MobiDBLite consensus disorder prediction 175 199 - -
Cme01g01219 951 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 3 111 - -
Cme01g01219 951 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 132 935 - -
Cme01g01219 951 SUPERFAMILY Sm-like ribonucleoproteins 764 823 IPR010920 -
Cme01g01219 951 Coils Coil 506 526 - -
Cme01g01219 951 PIRSF Memb_At2g17000 43 951 IPR016688 -
Cme01g01219 951 Pfam Mechanosensitive ion channel 716 920 IPR006685 GO:0016020|GO:0055085
Cme01g01219 951 MobiDBLite consensus disorder prediction 200 226 - -
Cme01g01219 951 MobiDBLite consensus disorder prediction 170 236 - -
Cme01g01219 951 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 3 111 IPR016688 -
Cme01g01219 951 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 132 935 IPR016688 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01219 Cme-Chr1:15415621 Cme11g01254 Cme-Chr11:19297825 0 dispersed
Cme01g01219 Cme-Chr1:15415621 Cme02g00283 Cme-Chr2:2367651 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01219 K22048 - csv:101207426 1684.08