Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01219 ATGGATACGCTCAAGAAATCTTTCAAAGGCAATGTATCTTTCAAGCATACAAGGAAGATTTCTGCTGGAGGAGTCAGCAGCGAAATCAATCACGAAGAGCTCCCCATTCTTCTCAATCACCAATCTACGGATCATCACCTGGTGAACGATTCTGATCCGTCTGACCGAACAGAGGTCATTCTCAAGATTGATGATGGTGGTTCTTCAGCTGTCTCCAGATCTCTGGACTCTGTTGCCAATAATGGCGGGAAGGTTTGGCGGGAATCCAGGTACGATTTCTGGAACAATGATGAAACTGGAATTGGGGAAAGTGCGAGTAGGGTTCGTGGTGCGAGAATGAGTGATAGTGGTGATGATGGAAATGAGGGATTTCAATTTGTACAGACTGGTTATGGAATGGAGGATCCACCTACGAAGCTGATTGGTGACTTTCTTCATAAGCAGAAAATTAGGGGAGAAACGACTTTGGATATGGATTTGGAAATGGAGGAATTGAAGCCTAATAGGATTATACCTCCATTGGCAGAGTCGCCGTTGAGTCAAACTTCTAAGGATCTTAAAGTTTCGTTTCAGCAGGATTCGACAGAAATTTCGAGCAATGATCAGTCAATGAGAAGGCGGTATAGAGATTCTCATGATTTGAAAGAAGAGTTTAAAGGAGAACAACCGCCATGGCAACAATCGCACCATGAACGTCTTGGATCTCCAACTATCTCTGGGGTTCAGAATGAGTCTCTTGCTGAGGCTATGAGATGCGCATCTAACTTGTCCTTTCATAGTGAGCTTTCGTTTCAAAGGAAGTCTAATTTACTGAGGGCGAAAACCAAGTCAAGATTGACAGACCCACCTGCCGAGCCTGACCGGCTCTCTGGCCTCATTCCTAAGTCAGGTCAACTACGATCTGGGTTTCTGGGGAAGATTGAAGACGACGACGATGACCCCTTTCTAGAGGATGACCTTCCAGACGATTTTAAAAGGGGAAATTTCACTGCTCTAACTGTTCTACAATGGTTTAGTTTGATTCTAATCACTGCAGCTTTTATCTGCACTCTTTCTGTTCCTTATTTGAGGGAAAAGAGTCTATGGGAGTTGGATATATGGAAATGGGAGGTGATGATTTTGATACTGATTTGTGGACGATTGGTATCTGGTTGGGGGATTAGGATTGCTGTATTTTTCATTGAGAGGAATTTCCTTTTGCGTAAAAGGGTTCTGTATTTTGTATATGGGGTTAGAAAGCCAGTGCAGAATTGTTTATGGTTAGGCCTTGTTTTGATCGCTTGGCATTTGTTGTTCAATAAACGGGTTGAGAAACAAACCAACACCAGTATACTCAATTATGTGAGCAGAGTTTTAGTTTGTCTCTTGATAAGCACACTGATATGGCTTGTGAAAACCTTGATGGTTAAGGTGCTTGCCTCTTCTTTCCATGTAAGCACATACTTCGATCGAATTCAGGAATCGTTGTTTAATCAATATGTCATTGAGACGCTCTCGGGGCCACCTCTGGTTGAAATACGGAAGAATGAGGAAGAAGAGGAGAGGATTGCAGATGAAGTTCAAAAATTGCAGAATGCAGGGCTGACCATACCCCCTGATCTCAAGGCAACCTTTGCTTCTATAAAGAGTGGAAGGGCAATAAGTAGTGAACGGACCCACAAAAGTTTTTGCGCAAAAAGTTCCAAATTCTCTCGAGCACTGACTAAAAATGGGAACGATGGAATAACGATTGACCACTTGCACAAACTAAGTCCGAAGAACGTGTCTGCCTGGAATATGAAGAGGTTGTTGAACATAGTTCGATATGGTAGTATTTCCACACTGGACGAGCAGATACGGGGGCCGTGTCTTGATGATGAATCTACTACAGAGATCAAAAGTGAACGCGAGGCAAAGGCTGCAGCAAAAAAGATTTTTCAGAATGTGGCTCGTCGTGGATATAAGTACATATACCTGGATGACTTAATGCGGTTCATGAGAGAAGACGAGGTTCTTAAAACGACGAGTCTCTTTGAAGGAGCCGCTGAAAACCGGAGGATAAGCAAATCTGTCTTGAAAAATTGGGTGGTCAATGTCTTCAGGGAACGAAGAGCCCTTGCTTTAACACTGAATGATACCAAAACAGCTGTGGATAAACTACATCACATGGTGAATGTCATATTCGGCATCCTTATATTAATTTTATGGCTTATAGTATTAGGAATTGCCTCCAGCAAATTTTTCATCTTCCTTAGTTCTCAAATAGTGGTTGTGGCATTTATTTTTGGAAACACTTGCAAAACCATATTTGAAGCAATCATCTTTTTGTTTGTCATGCATCCATTTGACGTTGGAGATCGCTGCGAAATCGATGGAACGCAGATGGTTGTGGAGGAAATGAACATCTTGACTACTGTATTCTTGAGATACGACAACTTGAAGATTATAATCCCAAATAGCGTTCTTGCAACCAAATTAATCCACAACTTCTACCGTAGTCCTGACATGGGCGAATCGGTTGAATTCTTTGTCCATATCGCTACACCAGCTGAGAAAATTACGGCCATGAAACAGAGAATTATAAGTTACATTGAAGGCAACAAAGAACATTGGTGTCCTGCCCCTATGATTGTGTTCAAGGATATAGATGGTTTAAACAAGCTCAAATTGGCAGTTTGGTTGTCACACAGAATGAACCATCAAGACTCAGCGGAAAGATGGGCTCGGAGGTCCGTCTTGGTCGAAGAAGTTGTTAAAGTCTGTCAAGAGCTCGATATTCAATATCGTCTATTGCCGATTGATATCAATATCCGTTCATTGCCTTCTTCTGCACCCTCCATTGGCTTTCCTTCAAATTGGACTTCCCCTGCAAGTTGA 2856 42.33 MDTLKKSFKGNVSFKHTRKISAGGVSSEINHEELPILLNHQSTDHHLVNDSDPSDRTEVILKIDDGGSSAVSRSLDSVANNGGKVWRESRYDFWNNDETGIGESASRVRGARMSDSGDDGNEGFQFVQTGYGMEDPPTKLIGDFLHKQKIRGETTLDMDLEMEELKPNRIIPPLAESPLSQTSKDLKVSFQQDSTEISSNDQSMRRRYRDSHDLKEEFKGEQPPWQQSHHERLGSPTISGVQNESLAEAMRCASNLSFHSELSFQRKSNLLRAKTKSRLTDPPAEPDRLSGLIPKSGQLRSGFLGKIEDDDDDPFLEDDLPDDFKRGNFTALTVLQWFSLILITAAFICTLSVPYLREKSLWELDIWKWEVMILILICGRLVSGWGIRIAVFFIERNFLLRKRVLYFVYGVRKPVQNCLWLGLVLIAWHLLFNKRVEKQTNTSILNYVSRVLVCLLISTLIWLVKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLVEIRKNEEEEERIADEVQKLQNAGLTIPPDLKATFASIKSGRAISSERTHKSFCAKSSKFSRALTKNGNDGITIDHLHKLSPKNVSAWNMKRLLNIVRYGSISTLDEQIRGPCLDDESTTEIKSEREAKAAAKKIFQNVARRGYKYIYLDDLMRFMREDEVLKTTSLFEGAAENRRISKSVLKNWVVNVFRERRALALTLNDTKTAVDKLHHMVNVIFGILILILWLIVLGIASSKFFIFLSSQIVVVAFIFGNTCKTIFEAIIFLFVMHPFDVGDRCEIDGTQMVVEEMNILTTVFLRYDNLKIIIPNSVLATKLIHNFYRSPDMGESVEFFVHIATPAEKITAMKQRIISYIEGNKEHWCPAPMIVFKDIDGLNKLKLAVWLSHRMNHQDSAERWARRSVLVEEVVKVCQELDIQYRLLPIDINIRSLPSSAPSIGFPSNWTSPAS 951
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15415621 15420150 + MELO3C013323.2.1 Cme01g01219 318195

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01219 951 Gene3D - 774 823 IPR023408 -
Cme01g01219 951 MobiDBLite consensus disorder prediction 175 199 - -
Cme01g01219 951 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 3 111 - -
Cme01g01219 951 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 132 935 - -
Cme01g01219 951 SUPERFAMILY Sm-like ribonucleoproteins 764 823 IPR010920 -
Cme01g01219 951 Coils Coil 506 526 - -
Cme01g01219 951 PIRSF Memb_At2g17000 43 951 IPR016688 -
Cme01g01219 951 Pfam Mechanosensitive ion channel 716 920 IPR006685 GO:0016020|GO:0055085
Cme01g01219 951 MobiDBLite consensus disorder prediction 200 226 - -
Cme01g01219 951 MobiDBLite consensus disorder prediction 170 236 - -
Cme01g01219 951 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 3 111 IPR016688 -
Cme01g01219 951 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 132 935 IPR016688 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01219 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csv:101207426 1684.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01219 Cme-Chr1:15415621 Cme11g01254 Cme-Chr11:19297825 0 dispersed
Cme01g01219 Cme-Chr1:15415621 Cme02g00283 Cme-Chr2:2367651 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g216 . Blo15g00394 Bda06g00468 . Bpe07g00704 . . Bma12g00910 . Cmo11g01757 . . . . Sed01g2461 . . Bhi05g01669 Tan02g0642 Cmetu01g0333 . . . . Cla02g00401 Cam02g0406 Cec02g0406 Cco02g0422 Clacu02g0409 Cmu02g0405 Cre02g0740 Cone12ag1250 . Cone3ag0976 Cone10ag1228 Lsi10g00810 . . Cme01g01219 . . . . Bpe15g00798 . . . . . . Cma11g01360 . . . Cpe16g00335 . . . . . . . . . . . . . . . . . Chy01g00654 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme06g00164 . 129 520 Mechanosensitive Ion Channel Family AT4G00290 65.8 9.0e-152 533.9
Cme03g01806 . 10 692 Mechanosensitive Ion Channel Family AT5G10490 57.4 7.2e-197 684.1
Cme06g02224 . 18 635 Mechanosensitive Ion Channel Family AT5G10490 55.3 2.2e-169 592.8
Cme03g01806 . 10 672 Mechanosensitive Ion Channel Family AT1G58200 57.4 7.3e-197 684.1
Cme06g02224 . 37 417 Mechanosensitive Ion Channel Family AT1G58200 69.0 3.0e-150 529.3
Cme11g01254 . 43 927 Mechanosensitive Ion Channel Family AT1G53470 55.4 3.9e-259 891.3
Cme01g01219 . 84 951 Mechanosensitive Ion Channel Family AT1G53470 50.4 1.2e-236 816.6
Cme11g01254 . 43 927 Mechanosensitive Ion Channel Family AT3G14810 52.8 5.6e-247 850.9
Cme11g01254 . 43 918 Mechanosensitive Ion Channel Family AT1G78610 59.2 1.5e-279 959.1
Cme01g01219 . 52 951 Mechanosensitive Ion Channel Family AT1G78610 55.6 1.8e-272 935.6
Cme11g01254 . 217 927 Mechanosensitive Ion Channel Family AT2G17000 60.7 2.6e-236 815.5
Cme01g01219 . 266 939 Mechanosensitive Ion Channel Family AT2G17000 58.0 1.9e-218 756.1
Cme02g00283 . 59 751 Mechanosensitive Ion Channel Family AT5G12080 52.4 2.8e-194 675.6
Cme07g00186 . 61 715 Mechanosensitive Ion Channel Family AT5G12080 53.3 4.3e-187 651.7
Cme07g00187 . 81 730 Mechanosensitive Ion Channel Family AT5G12080 52.6 2.0e-176 616.3
Cme07g00182 . 68 703 Mechanosensitive Ion Channel Family AT5G12080 52.6 1.6e-173 606.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01219 Cme_Chr01 FPKM 17.16432 22.119947 19.287033 17.888105 18.311644 13.677163 21.022919 14.827659 13.910619 14.476117