Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01222 ATGAACAAGAGGGCTAGAATTGATGATTCCAATAAGGCAGTGGTCAATGTCTGGAAGCGGGAGGTTGGAGAGCTTTCCACTAGGAATTTTGCCCACCGTCTTGGTGCTTTGGAGGATCTCGTGCTTCGACTTGATCTTTACAAGAAACTGGAGAGGCACAAAGGTTGTGTGAACACCGTGAGCTTTAATGCTGCTGGTGATATTTTAGTGTCAGGCTCTGATGATAGGCGGGTGATTCTCTGGAATTGGGAAACCGGGCGTGTCAAGCTCTCTTTTCAGTCTGGTCACAATAACAATGTTTTTCAAGCAAAAATCATGCCTTACACGGATGATCGAAGCATTGTGACTTGTGCTGCAGATGGGCAGGTGAGGCATGCTCAGATTCTGAATAGTGGGCACGTGGAAACTTCACTGCTCGGCAGTCATCTAGGGCGAGCTCATAAGTTGGCCATTGAACCTGGTAGTCCTTATATGTTCTATACTTGTGGTGAAGATGGATTGGTGCAACGTTTTGATCTAAGAACTGGGGCTGCCGTTGAGCTGTTTACTTGCCAATCAGTTGACAATAGGGCAGGTTACATGTCATCAATTCAGCTAAATGCAATTGTGATTGATCCCAGAAATCCAAATCTCTTTGTTGTTGCTGGTTCAGATGAGTATGCGCGATTATATGATATTCGCAAATCTGGGGAGGATGGTTCAACTGATTTTGGTCAACTGGCAGACTGCTATTGCCCCCCTCACTTGATTGGCGATGAACAAGTGGGAATAACAGGTCTAGCCTTCTCAGAGCTCAGTGAGCTCCTTGTCTCATACAATGATGAATCCATTTATCTCTTTAATAGGGATATGGGTTTGGGCCCAAACCCAAATCCAGCGCCTCCACTATCTCTGAGTAGTGATGCAAGTGAAATGGGAGCTGAAAAAGTTGACAATGGTATTCCACAAGTTTATAAAGGACATAGAAACTGTGAGACAGTTAAAGGGGTCAATTTTTTTGGACCTAAATGTGAGTATGTCGTTAGTGGTTCTGATTGTGGCAGAATATTTATATGGAGGAAAAAAGGTGGAGAGCTAATCCGTGTCATGGAAGCTGACGAGGATGTCGTGAACTGCATTGAGCCCCATCCTCATATGACCATGCTTGCTAGTAGTGGAATTGAAAGTGATGTCAAGATATGGACTCCAAAGGCCCATGAAAGAGCTACTCTTCCTGAGAAAATTGAACAGAAACCAAAGCCTAGAGGATGGATGCACCGCTTAGCGTTACCGGAGGAACTGATGATGCAACTGTTTTCACTGCGAAGACAGACTTCGAGCCCCGAACGTGGAAGAGAACCTCCTACTGTAAGTAGAGAACTTCTAGAGTTGATAATGACATTCAACAATGGCAACAGCGATGACTCTTCAGATTATAATGATGATACTGGTGAAGATGATTGA 1443 44.42 MNKRARIDDSNKAVVNVWKREVGELSTRNFAHRLGALEDLVLRLDLYKKLERHKGCVNTVSFNAAGDILVSGSDDRRVILWNWETGRVKLSFQSGHNNNVFQAKIMPYTDDRSIVTCAADGQVRHAQILNSGHVETSLLGSHLGRAHKLAIEPGSPYMFYTCGEDGLVQRFDLRTGAAVELFTCQSVDNRAGYMSSIQLNAIVIDPRNPNLFVVAGSDEYARLYDIRKSGEDGSTDFGQLADCYCPPHLIGDEQVGITGLAFSELSELLVSYNDESIYLFNRDMGLGPNPNPAPPLSLSSDASEMGAEKVDNGIPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWRKKGGELIRVMEADEDVVNCIEPHPHMTMLASSGIESDVKIWTPKAHERATLPEKIEQKPKPRGWMHRLALPEELMMQLFSLRRQTSSPERGREPPTVSRELLELIMTFNNGNSDDSSDYNDDTGEDD 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15464393 15471111 + MELO3C013326.2.1 Cme01g01222 318198

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01222 480 SUPERFAMILY WD40 repeat-like 42 394 IPR036322 GO:0005515
Cme01g01222 480 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 50 87 - -
Cme01g01222 480 Pfam WD domain, G-beta repeat 49 82 IPR001680 GO:0005515
Cme01g01222 480 Pfam WD domain, G-beta repeat 316 352 IPR001680 GO:0005515
Cme01g01222 480 SMART WD40_4 183 225 IPR001680 GO:0005515
Cme01g01222 480 SMART WD40_4 311 353 IPR001680 GO:0005515
Cme01g01222 480 SMART WD40_4 356 395 IPR001680 GO:0005515
Cme01g01222 480 SMART WD40_4 242 281 IPR001680 GO:0005515
Cme01g01222 480 SMART WD40_4 43 82 IPR001680 GO:0005515
Cme01g01222 480 SMART WD40_4 85 127 IPR001680 GO:0005515
Cme01g01222 480 SMART WD40_4 131 172 IPR001680 GO:0005515
Cme01g01222 480 PANTHER WD40/YVTN REPEAT-LIKE-CONTAINING DOMAIN-CONTAINING PROTEIN-RELATED 8 462 - -
Cme01g01222 480 MobiDBLite consensus disorder prediction 460 480 - -
Cme01g01222 480 Gene3D - 39 397 IPR015943 GO:0005515
Cme01g01222 480 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 8 462 IPR045151 -
Cme01g01222 480 ProSiteProfiles Trp-Asp (WD) repeats profile. 50 91 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01222 K11804 DCAF8; DDB1- and CUL4-associated factor 8 - csv:101212571 912.138
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01222 Cme-Chr1:15464393 Cme11g01757 Cme-Chr11:25744227 7.03E-148 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g212 . Blo15g00392 Bda06g00470 . Bpe07g00706 . . . Cmo19g00770 . . . . . Sed04g3828 . Cpe15g00612 Bhi05g01673 Tan02g0645 Cmetu01g0918 . Hepe02g0403 . . . . . . . . . . . Cone3ag0974 . . Csa07g00126 . Cme01g01222 . . . . . . . . . . . . Cma19g00757 . Car19g00591 . . . . . . . . . . . . . . . . Lsi11g01221 . Chy01g00657 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002748 1 4 1 0 1 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 2 2 2 3 2 3 2 2 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01222 Cme_Chr01 FPKM 30.920319 36.297768 65.394295 65.425461 26.02318 22.657511 22.166809 88.091972 91.783035 80.478973