Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01238 ATGGGTGTGGAACAAAACAATCATGATGCAGAGGAGGGAACGCTGGAGATTGGAATGGAATATAGAACAGTCTCTGGAGTTGCTGGTCCCTTGGTTATTCTGGACAAAGTCAAGGGACCTAAATTTCAGGAGATTGTTAATATTCGTCTAGGAGATGGAACAACCAGGCGTGGTCAAGTCCTGGAAGTGGATGGGGAGAAAGCTGTTGTTCAGGTATTTGAAGGAACATCTGGAATTGATAACAAATATACAACCGTGCAATTTACCGGAGAGGTTTTGAAAACTCCAGTCTCCTTGGACATGCTTGGGCGAATTTTTAATGGTTCTGGAAAACCCATTGATAATGGTCCTCCTATCTTGCCTGAGGCATACTTGGATATTTCTGGGAGTTCTATAAACCCTAGTGAGAGAACTTATCCTGAAGAAATGATACAGACTGGAATTTCAACAATTGATGTCATGAATTCCATTGCTAGAGGGCAAAAGATCCCACTTTTCTCAGCTGCAGGTCTTCCTCACAATGAAATTGCTGCCCAGATATGTCGTCAAGCTGGCTTAGTAAAACGGTTGGAGAAATCCAACGATCTTCTTGAGGGTGGTGAAGAGGACAACTTTGCCATTGTTTTTGCTGCTATGGGTGTTAACATGGAGACTGCTCAATTTTTCAAACGTGATTTTGAAGAAAATGGTTCAATGGAGAGAGTGACCCTATTTCTGAACCTGGCTAATGATCCTACAATTGAGCGTATCATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCATATGAATGTGGGAAGCATGTTCTTGTCATACTGACAGATATGAGTTCTTATGCTGATGCCCTTCGTGAGGTGTCTGCTGCACGAGAGGAAGTGCCTGGAAGGCGTGGATACCCTGGTTATATGTATACTGATCTTGCTACAATCTATGAACGAGCTGGACGTATTGAAGGACGTAAAGGATCCATCACTCAAATCCCAATCCTCACCATGCCTAACGATGATATTACACATCCTACTCCCGATCTTACTGGTTATATCACTGAGGGACAGATCTATATCGACAGGCAGCTCTACAACAGACAGATATACCCACCAATTAATGTCCTCCCTTCATTGTCTCGTCTCATGAAGAGTGCCATTGGTGAGGGAATGACCCGTAGGGATCATGCTGATGTATCCAACCAGCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAGGCCATGAAAGCCGTGGTCGGAGAAGAAGCACTCTCTTCTGAGGATCTGCTCTATTTGGAGTTTTTGGACAAATTTGAGAGGAAGTTTGTCACTCAAGGAGCTTACGATACTCGAAACATTTTCCAATCACTTGACCTGGCATGGACACTGCTTCGTATTTTCCCTCGTGAACTTCTGCACCGTATACCTGCAAAGACTCTTGATCTGTTTTACAGCCGAGAATCTGCAAATTGA 1467 43.49 MGVEQNNHDAEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSNDLLEGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDLFYSRESAN 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15746545 15753046 - MELO3C013334.2.1 Cme01g01238 318214

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01238 488 PIRSF V-ATPsynth_beta/V-ATPase_B 11 488 IPR022879 -
Cme01g01238 488 CDD V_A-ATPase_B 92 379 - -
Cme01g01238 488 CDD ATP-synt_V_A-type_beta_N 20 91 - -
Cme01g01238 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 383 IPR027417 -
Cme01g01238 488 Hamap V-type ATP synthase beta chain [atpB]. 18 486 IPR022879 -
Cme01g01238 488 Gene3D - 29 488 - -
Cme01g01238 488 ProSitePatterns ATP synthase alpha and beta subunits signature. 368 377 IPR020003 GO:0005524
Cme01g01238 488 Pfam ATP synthase alpha/beta family, beta-barrel domain 24 90 IPR004100 GO:0046034|GO:1902600
Cme01g01238 488 TIGRFAM V-ATPase_V1_B: V-type ATPase, B subunit 20 487 IPR005723 GO:0033180|GO:0046961|GO:1902600
Cme01g01238 488 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 147 377 IPR000194 GO:0005524
Cme01g01238 488 CDD ATP-synt_V_A-type_beta_C 387 481 - -
Cme01g01238 488 PANTHER V-TYPE PROTON ATPASE SUBUNIT B1-RELATED 2 488 - -
Cme01g01238 488 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 2 488 IPR022879 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01238 K02147 ATPeV1B, ATP6B; V-type H+-transporting ATPase subunit B - csv:101211838 963.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01238 Cme-Chr1:15746545 Cme10g00209 Cme-Chr10:1400630 9.92E-28 dispersed
Cme01g01238 Cme-Chr1:15746545 Cme09g01409 Cme-Chr9:19277225 4.80E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g198 . . . . . Bpe12g00130 . . Cmo19g00765 Cmo11g01753 . . . . Sed05g2251 Cpe04g00605 Cpe15g00607 Bhi05g01684 Tan02g0657 Cmetu10g1323 . . . . Cla02g00408 Cam02g0414 Cec02g0413 Cco02g0431 Clacu02g0417 Cmu02g0413 Cre02g0748 Cone12ag1245 . . . . Csa07g00121 . Cme01g01238 Blo04g00583 Blo13g00496 Bda15g01024 Bda14g00625 Bpe15g00802 . Bma03g00617 Bma08g00610 . . . Cma11g01365 Cma19g00752 . Car19g00587 . . . . . . . . . . . . . . . . Lsi11g01217 . Chy01g00662 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme11g01758 . 73 886 Primary Pumps ATPases(2) AT2G28520 81.3 0.0e+00 1342.4
Cme01g01362 . 70 873 Primary Pumps ATPases(2) AT2G28520 63.2 1.6e-294 1008.8
Cme03g01909 . 2 519 Primary Pumps ATPases(2) AT2G28520 69.3 4.2e-215 745.0
Cme01g01362 . 66 878 Primary Pumps ATPases(2) AT2G21410 75.8 0.0e+00 1234.2
Cme11g01758 . 81 890 Primary Pumps ATPases(2) AT2G21410 62.5 2.3e-298 1021.5
Cme03g01909 . 9 524 Primary Pumps ATPases(2) AT2G21410 76.9 1.2e-238 823.2
Cme01g01362 . 68 878 Primary Pumps ATPases(2) AT4G39080 77.1 0.0e+00 1240.3
Cme11g01758 . 81 890 Primary Pumps ATPases(2) AT4G39080 63.4 2.6e-297 1018.1
Cme03g01909 . 9 524 Primary Pumps ATPases(2) AT4G39080 77.8 1.6e-238 822.8
Cme03g01900 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cme06g00383 . 28 122 Primary Pumps ATPases(2) AT4G34720 98.9 1.9e-38 155.6
Cme06g00382 . 28 122 Primary Pumps ATPases(2) AT4G34720 98.9 1.9e-38 155.6
Cme03g01900 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Cme06g00383 . 2 122 Primary Pumps ATPases(2) AT1G75630 96.7 5.2e-50 194.5
Cme06g00382 . 2 122 Primary Pumps ATPases(2) AT1G75630 96.7 5.2e-50 194.5
Cme03g01900 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.2e-74 274.2
Cme06g00383 . 3 122 Primary Pumps ATPases(2) AT2G16510 99.2 6.0e-52 200.7
Cme06g00382 . 3 122 Primary Pumps ATPases(2) AT2G16510 99.2 6.0e-52 200.7
Cme06g00383 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 3.1e-53 204.5
Cme06g00382 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 3.1e-53 204.5
Cme03g01900 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Cme03g01656 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.7 2.3e-70 262.3
Cme04g00385 . 7 160 Primary Pumps ATPases(2) AT2G25610 83.8 5.7e-61 231.1
Cme03g01900 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.8e-60 227.6
Cme06g00383 . 28 122 Primary Pumps ATPases(2) AT4G38920 98.9 5.4e-38 154.1
Cme06g00382 . 28 122 Primary Pumps ATPases(2) AT4G38920 98.9 5.4e-38 154.1
Cme03g01656 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.8 1.9e-71 265.8
Cme04g00385 . 1 160 Primary Pumps ATPases(2) AT4G32530 73.7 8.7e-64 240.4
Cme12g00230 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.2 0.0e+00 1666.0
Cme12g00230 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.2 0.0e+00 1669.8
Cme12g00230 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.8 0.0e+00 1319.7
Cme02g00511 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 1.3e-57 219.2
Cme01g01238 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 4.3e-268 920.2
Cme04g02533 . 2 109 Primary Pumps ATPases(2) AT3G01390 79.6 3.6e-37 151.0
Cme09g01067 . 1 376 Primary Pumps ATPases(2) AT1G12840 83.0 5.3e-181 630.6
Cme05g00306 . 63 323 Primary Pumps ATPases(2) AT3G58730 81.6 8.4e-117 416.8
Cme04g02122 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.9 1.3e-207 719.2
Cme03g01900 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.2e-74 274.2
Cme06g00383 . 3 122 Primary Pumps ATPases(2) AT2G16510 99.2 6.0e-52 200.7
Cme06g00382 . 3 122 Primary Pumps ATPases(2) AT2G16510 99.2 6.0e-52 200.7
Cme01g01238 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.7 1.1e-269 925.6
Cme06g01749 . 1 176 Primary Pumps ATPases(2) AT1G64200 77.0 6.5e-66 247.3
Cme01g01238 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 9.1e-266 912.5
Cme11g01758 . 73 886 Primary Pumps ATPases(2) AT2G28520 81.3 0.0e+00 1342.4
Cme01g01362 . 70 873 Primary Pumps ATPases(2) AT2G28520 63.2 1.6e-294 1008.8
Cme03g01909 . 2 519 Primary Pumps ATPases(2) AT2G28520 69.3 4.2e-215 745.0
Cme04g01965 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 6.1e-192 666.8
Cme06g01749 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.4 7.7e-90 327.0
Cme01g02735 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.1 0.0e+00 1172.1
Cme01g01238 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 4.3e-268 920.2
Cme01g01238 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.7 1.1e-269 925.6
Cme01g01238 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 9.1e-266 912.5
Cme09g01067 . 1 376 Primary Pumps ATPases(2) AT1G12840 83.0 5.3e-181 630.6
Cme05g00306 . 63 323 Primary Pumps ATPases(2) AT3G58730 81.6 8.4e-117 416.8
Cme06g01749 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.4 7.7e-90 327.0
Cme06g01749 . 1 223 Primary Pumps ATPases(2) AT3G08560 69.5 6.5e-76 280.8
Cme06g01749 . 1 176 Primary Pumps ATPases(2) AT1G64200 77.0 6.5e-66 247.3
Cme02g00511 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 1.3e-57 219.2
Cme04g02533 . 2 109 Primary Pumps ATPases(2) AT3G01390 79.6 3.6e-37 151.0
Cme04g02122 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.9 1.3e-207 719.2
Cme11g01758 . 73 886 Primary Pumps ATPases(2) AT2G28520 81.3 0.0e+00 1342.4
Cme01g01362 . 70 873 Primary Pumps ATPases(2) AT2G28520 63.2 1.6e-294 1008.8
Cme03g01909 . 2 519 Primary Pumps ATPases(2) AT2G28520 69.3 4.2e-215 745.0
Cme01g01362 . 66 878 Primary Pumps ATPases(2) AT2G21410 75.8 0.0e+00 1234.2
Cme11g01758 . 81 890 Primary Pumps ATPases(2) AT2G21410 62.5 2.3e-298 1021.5
Cme03g01909 . 9 524 Primary Pumps ATPases(2) AT2G21410 76.9 1.2e-238 823.2
Cme01g01362 . 68 878 Primary Pumps ATPases(2) AT4G39080 77.1 0.0e+00 1240.3
Cme11g01758 . 81 890 Primary Pumps ATPases(2) AT4G39080 63.4 2.6e-297 1018.1
Cme03g01909 . 9 524 Primary Pumps ATPases(2) AT4G39080 77.8 1.6e-238 822.8
Cme03g01900 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cme06g00383 . 28 122 Primary Pumps ATPases(2) AT4G34720 98.9 1.9e-38 155.6
Cme06g00382 . 28 122 Primary Pumps ATPases(2) AT4G34720 98.9 1.9e-38 155.6
Cme06g00383 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 3.1e-53 204.5
Cme06g00382 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 3.1e-53 204.5
Cme03g01900 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Cme03g01900 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.8e-60 227.6
Cme06g00383 . 28 122 Primary Pumps ATPases(2) AT4G38920 98.9 5.4e-38 154.1
Cme06g00382 . 28 122 Primary Pumps ATPases(2) AT4G38920 98.9 5.4e-38 154.1
Cme03g01900 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Cme06g00383 . 2 122 Primary Pumps ATPases(2) AT1G75630 96.7 5.2e-50 194.5
Cme06g00382 . 2 122 Primary Pumps ATPases(2) AT1G75630 96.7 5.2e-50 194.5
Cme03g01900 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.2e-74 274.2
Cme06g00383 . 3 122 Primary Pumps ATPases(2) AT2G16510 99.2 6.0e-52 200.7
Cme06g00382 . 3 122 Primary Pumps ATPases(2) AT2G16510 99.2 6.0e-52 200.7
Cme03g01656 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.8 1.9e-71 265.8
Cme04g00385 . 1 160 Primary Pumps ATPases(2) AT4G32530 73.7 8.7e-64 240.4
Cme03g01656 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.7 2.3e-70 262.3
Cme04g00385 . 7 160 Primary Pumps ATPases(2) AT2G25610 83.8 5.7e-61 231.1
Cme04g01965 . 1 351 Primary Pumps ATPases(2) AT3G28710 94.3 5.3e-199 690.3
Cme04g01965 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 6.1e-192 666.8
Cme12g00230 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.2 0.0e+00 1666.0
Cme12g00230 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.8 0.0e+00 1319.7
Cme12g00230 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.2 0.0e+00 1669.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003683 2 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 3 1 1 4 2 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01238 Cme_Chr01 FPKM 13.27512 13.300546 3.315353 2.844263 34.460949 28.335211 33.087799 2.432054 2.287801 2.674656