Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01239 ATGGCAGCCACTCTTTCCGTCCGTCCCAACCCTCTTTCCGGCGGCGCAGCCTTTCCTACACTGCCAGCTCACCGTCTCGTTTCTACCTTCCTCGGAAAGTTTACTCCATTGAAAGGCGTTAGCATTTCACAAGTCTTTCAAACGCCGGCGATGACGGCCACGCTGGTGCAAGCCGGCTCGAGAGCCGACGACTCTACGCCATTCGAGATGTCCGTGGACAACGCTCTCAAGGTTCTCGGAGTTTCTGATGCGGCCTCGTTCGATGATATTCTTCGTGCAAGGAATTCGATTCTGGCCGATTGCAAGGACGAAGAAGAAACTGTGGCACAGATTGAGGCTGCATATGACATGTTACTAATGCGAAGCTTGACTCAGCGGCGAGCGGGAAAAGTTGTGAGTAGCAGGATACTTTATGCTGATGTCAAACACATCAAGGAGTCAAAGACTCGCTTAATGCCTCAGTGGCTCCAATCTACACGGAAGAACACACAATTGTCTATTGAAACGCCAACTATTAGTGATTTTGGCATACAAGCAGTTGTATATGGAGCTTTGATGGTTTTAACTTATGTAAATGGAGCAGCCACATCTACTATGATGAAATATGATGGGGCTGATGTTCCTGGACTAATCTTAGCAAGTAGCTTTGGAGCTTCCTTGTACTTCATGACCAAAAGAAACGTGAAGCTTGGAAAAGCATCCATCATAGTCATAGGTGGGCTTGTGGCAGGTGCAGTAGTTGGTTCAACAGTTGAGAATTGGTTGCAAGTAGGAATCGTTCCTTTCCTCGGCTTACAGTCTCCTTTCGCTGTGATAAGTGAATTTATTCTCTTCTCTCAATTTTTAGTCTCTCTTTACTTGAGTTAG 867 46.71 MAATLSVRPNPLSGGAAFPTLPAHRLVSTFLGKFTPLKGVSISQVFQTPAMTATLVQAGSRADDSTPFEMSVDNALKVLGVSDAASFDDILRARNSILADCKDEEETVAQIEAAYDMLLMRSLTQRRAGKVVSSRILYADVKHIKESKTRLMPQWLQSTRKNTQLSIETPTISDFGIQAVVYGALMVLTYVNGAATSTMMKYDGADVPGLILASSFGASLYFMTKRNVKLGKASIIVIGGLVAGAVVGSTVENWLQVGIVPFLGLQSPFAVISEFILFSQFLVSLYLS 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15759007 15761928 + MELO3C013335.2.1 Cme01g01239 318215

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01239 288 PANTHER - 1 287 IPR021788 -
Cme01g01239 288 Pfam Protein CHAPERONE-LIKE PROTEIN OF POR1-like 84 287 IPR021788 -
Cme01g01239 288 PANTHER SLR1918 PROTEIN 1 287 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01239 - - - cmo:103490266 538.495
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme01g01239 Cme11g00365 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01784 Cme-Chr2:24683899 Cme01g01239 Cme-Chr1:15759007 1.13E-17 transposed
Cme07g01648 Cme-Chr7:22196330 Cme01g01239 Cme-Chr1:15759007 4.27E-08 transposed
Cme01g01239 Cme-Chr1:15759007 Cme11g00365 Cme-Chr11:3715328 2.65E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g189 . Blo15g00385 . . Bpe07g00711 . . Bma12g00916 . . Cma02g00271 Cma20g00738 . Car20g00640 Sed01g0659 . . Bhi05g01686 Tan02g0658 Cmetu01g0591 . Hepe02g0409 . . Cla02g00409 Cam02g0415 Cec02g0414 Cco02g0432 Clacu02g0418 Cmu02g0414 Cre02g0749 Cone12ag1244 Cone8ag1301 . . Lsi10g00508 Csa07g00120 Chy11g00242 Cme01g01239 . . . . . Bpe05g00297 . . . Cmo02g00268 Cmo20g00735 . . . . Cpe16g00328 Cpe05g01361 . . . . . . . Cla02g01183 Cam02g1260 Cec02g1271 Cco02g1309 Clacu02g1242 Cmu02g1209 Cre02g1524 Lsi11g01216 Csa02g01407 Chy01g00663 Cme11g00365
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002687 1 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 3 1 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01239 Cme_Chr01 FPKM 14.158975 13.481382 2.594938 3.597294 40.575642 29.634247 44.445808 1.526527 1.589595 3.459789