Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01246 ATGAAAAGGAATCCAGTAAAACTGAAACAACTTGTGTTAAGCAAGCTTGGAGAGATACCTGAGGCAGCAAGGGCTGTGATAGAAGAAACTGATGTGAGTTGTTTTCAACCAGCACCATTGCAATACAGACCTCCATGGGAGCTCATGTTGGGCAACATTGTGAAAGGCAATGTGTGTGTGGCTGGTGATGCATTGCACCCAATGACTCCAGACTTAGGCCAAGAAGCCCTGCTGAAGAAACCAAGCAGCCAGGAGGGGGAGAAGGCAGAAAGAGAGCAGCAAGAGCAGGTTGAGATGGGGCTGAAGAAGTATGCGTCAGAGAGGAAATGGAGGAGCATCGCGCTGATCGGTACGGCTTATATGGTGGGTAGGATACAACAAAGCAGTGGGGTGTTTGCTAAGTTTATTAGGGATAAGATTTTGTCTAAGTTTCTG 435 47.36 MKRNPVKLKQLVLSKLGEIPEAARAVIEETDVSCFQPAPLQYRPPWELMLGNIVKGNVCVAGDALHPMTPDLGQEALLKKPSSQEGEKAEREQQEQVEMGLKKYASERKWRSIALIGTAYMVGRIQQSSGVFAKFIRDKILSKFL 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15838317 15838802 + MELO3C001148.2.1 Cme01g01246 318222

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01246 145 MobiDBLite consensus disorder prediction 81 96 - -
Cme01g01246 145 Gene3D - 2 122 IPR036188 -
Cme01g01246 145 MobiDBLite consensus disorder prediction 71 96 - -
Cme01g01246 145 PANTHER FAD/NAD(P)-BINDING OXIDOREDUCTASE FAMILY PROTEIN 1 145 IPR044560 -
Cme01g01246 145 SUPERFAMILY FAD/NAD(P)-binding domain 42 142 IPR036188 -
Cme01g01246 145 PANTHER MONOOXYGENASE 2-RELATED 1 145 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01246 - - - cmo:103504244 273.863
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01246 Cme-Chr1:15838317 Cme04g00028 Cme-Chr4:179415 8.97E-07 dispersed
Cme01g01246 Cme-Chr1:15838317 Cme01g01249 Cme-Chr1:15878568 6.88E-46 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g181 . . . . . . . . Cmo19g00759 . . . . . Sed04g3841 . Cpe15g00602 Bhi05g01693 Tan02g0663 Cmetu01g2493 . Hepe02g0414 . . Cla02g00414 Cam02g0424 Cec02g0422 Cco02g0440 Clacu02g0425 Cmu02g0420 Cre02g0754 Cone12ag1241 Cone8ag1296 . . . Csa07g00113 . Cme01g01246 Blo04g00580 . . Bda14g00623 Bpe15g00804 . . . . . . . Cma19g00748 . Car19g00578 . . . . . . . . . . . . . . . . Lsi11g01212 . Chy01g00670 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001099 3 2 7 1 2 3 4 2 2 3 2 2 0 4 2 3 2 5 2 2 2 2 1 2 2 1 2 4 2 7 78
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01246 Cme_Chr01 FPKM 81.166946 89.615311 23.702847 24.674639 38.16576 42.96674 35.824165 6.822634 6.185505 5.713296