Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01251 TCCATTGGTTTTTTCTTCTCATTTAGAAGATCCGACCTTCTTCGTGGTATCGCAACCGAGAAATCAGCATTCCCCGAGTTTTTTCGCAATCCTGCAAAGGAATTTCGGCGGCCACCGTCGAAGATGATCGTCTGCGTCGCCGTCGTTGGCCACCAGAACAACCCCCTTTACATTCAAAGCTTCACGGAGGCCGATGATGCTCTCAAGCTCCACCACATTGTACACTGTTCGCTGGATGTCGTCGATGAGAGAGTGAACAATCCGAGAAAATCTGGACCGACACTGAACGAGACATTTCTGGGTCTTCTTTATCCGACAGAAAATTACAAAGTGTATGGCTATTTGACTAATACCAAAGTGAAGTTTATTATGGTGACAACAGATCTAGATGTCAGAGATGCCGATGTTAGAAGTTTTTTCAGGAGATTTCATGCTGCATATGTAGATGCAGTTTCGAACCCATTTCATGTGCCAGGTAAGAAAATTACTTCCAAAACTTTTGCAGAAAGTGTGAGCACCATTGTCAAGTCATTTGGCTTCAGTTCAGCTATTTGA 555 43.96 SIGFFFSFRRSDLLRGIATEKSAFPEFFRNPAKEFRRPPSKMIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15888446 15890884 - MELO3C013345.2.1 Cme01g01251 318227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01251 184 PANTHER TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 2 42 179 IPR006722 GO:0006888
Cme01g01251 184 CDD TRAPPC2L 44 175 IPR044760 GO:0006888
Cme01g01251 184 Pfam Sedlin, N-terminal conserved region 48 176 IPR006722 GO:0006888
Cme01g01251 184 SUPERFAMILY SNARE-like 43 178 IPR011012 -
Cme01g01251 184 Gene3D - 38 181 - -
Cme01g01251 184 PANTHER BNAA06G40850D PROTEIN 42 179 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01251 K20301 TRAPPC2, TRS20; trafficking protein particle complex subunit 2 - csv:101211102 290.812
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01251 Cme-Chr1:15888446 Cme11g00005 Cme-Chr11:73837 6.82E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g178 . . . . . . . . . Cmo11g01749 . . . . Sed05g3908 Cpe04g00601 . Bhi05g01696 Tan02g0668 Cmetu01g1432 . Hepe02g0416 . . Cla02g00416 Cam02g0426 Cec02g0424 Cco02g0442 Clacu02g0427 Cmu02g0422 Cre02g0756 . . Cone3ag0958 Cone10ag1231 . Csa07g00111 . Cme01g01251 . . . . . . . . . . . Cma11g01369 . . . . . . . . . . . . . . . . . . . Lsi11g01211 . Chy01g00672 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010608 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01251 Cme_Chr01 FPKM 43.363892 48.259964 17.801657 17.435457 22.392384 19.497656 18.307625 13.363716 15.599066 13.933613