Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01253 ATGTCCAAAGAAGTGACGGAAGAGGGACAGTCCGGCCTCAGAAAGGACTACGTCGACCCACCCCCGGCTCCACTCATCGACGTCGCCGAACTCACCCTCTGGTCCTTCTACAGAGCCCTTATCGCTGAGTTCATCGCCACTCTCCTCTTTCTCTACGTCACAATCGCCACCGTCATCGGCAACAACAAACAGACCAAAATGTGTGATGGCGTTGGAATCCTCGGAATCGCCTGGGCCTTCGGTGGCATGATCTTCGTCCTCGTCTACTGCACCGCCGGAATCTCCGGTGGTCATATTAATCCAGCGGTGACATTCGGGTTGTTCCTTGCGAGGAAAGTGTCGCTGATCAGAGCGTTTGGGTACATGGTGGCGCAGTGCGCCGGAGCCATTGTTGGCGTTGGGTTAGTCAAGGCTTTCATGAAGCATGATTATAACAACAACGGCGGCGGAGCCAACGCCGTTAATTCTGGTTACAGTAGAGGAACAGCTCTTGGTGCTGAGATTATTGGAACTTTCGTTCTTGTTTACACTGTCTTCTCCGCTACTGATCCCAAGAGGAGCGCGCGTGATTCTCACATTCCTGTTTTAGCTCCATTGCCAATTGGGTTCGCCGTGTTCATGGTTCATTTAGCAACCATTCCCATTACAGGAACCGGAATCAACCCGGCCAGAAGCTTCGGCGCCGCCGTCATCTACAACCGTGAAAAACCCTGGAATGACCACTGGATCTTCTGGGTGGGTCCGTTCGTCGGAGCATTAGCGGCGGCAGCGTACCACCAGTACATTCTCCGGGCAGCCGCCATTAAAGCTTTGGGATCATTCCGCAGCAACCCCACAAACTGA 843 53.74 MSKEVTEEGQSGLRKDYVDPPPAPLIDVAELTLWSFYRALIAEFIATLLFLYVTIATVIGNNKQTKMCDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAFGYMVAQCAGAIVGVGLVKAFMKHDYNNNGGGANAVNSGYSRGTALGAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNREKPWNDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPTN 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15927926 15929948 - MELO3C013347.2.1 Cme01g01253 318229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01253 280 Gene3D Glycerol uptake facilitator protein. 23 280 IPR023271 -
Cme01g01253 280 CDD MIP 38 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme01g01253 280 Pfam Major intrinsic protein 31 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme01g01253 280 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Cme01g01253 280 TIGRFAM MIP: MIP family channel proteins 42 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme01g01253 280 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme01g01253 280 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme01g01253 280 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme01g01253 280 PRINTS Major intrinsic protein family signature 166 184 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme01g01253 280 PRINTS Major intrinsic protein family signature 202 224 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme01g01253 280 PRINTS Major intrinsic protein family signature 242 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme01g01253 280 PANTHER AQUAPORIN PIP-TYPE-RELATED 1 280 - -
Cme01g01253 280 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 280 IPR034294 -
Cme01g01253 280 SUPERFAMILY Aquaporin-like 30 264 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01253 Cme-Chr1:15927926 Cme08g02310 Cme-Chr8:30084894 5.39E-155 dispersed
Cme01g01253 Cme-Chr1:15927926 Cme10g00071 Cme-Chr10:533417 3.57E-158 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01253 K09872 - csv:101209627 556.214