Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01269 ATGGCCTTGCCCGTCGTAGACACCGAATACCTCAAGGAGATCGACAAGGCTCGCCGTGACCTTCGCGCTCTCATTGCTAATCGGAATTGTGCTCCGATCATGCTTCGTTTGGCTTGGCATGACGCTGGCACTTATGATGTGGTTACGAAAATTGGTGGACCTAATGGATCGATTAGGAACGAGGAGGAGTTTTCTCATGGTTCTAATAATGGACTGAAAAAAGCTATTGATTTTTGTGAGGAAGTGAAGTCTAAACATCCTAAGATTACTTACGCAGACCTGTACCAGCTAGCTGGCGTTGTTGCTGTTGAGGTCACTGGAGGCCCCACCATTGACTTTGTTCCCGGTAGAAAGGATTCAAACATTTGTCCTAAGGAAGGCCACCTTCCTGATGCCAAAAAAGGTGCACCACATCTGCGTGACATCTTTTATAGGATGGGCCTGTCTGACAAGGATATTGTTGCATTATCCGGGGGTCACACTTTGGGAAGAGCTCATCCGGAGAGATCTGGTTTTGATGGACCTTGGACAGAGGATCCTCTGAAGTTTGATAACTCATACTTTGTGGAACTGTTGAAAGGAGAAACAGAGGGATTATTAAAACTTCCTACGGACAAGGCTTTACTTGAAGATCCTGAGTTCCGCCAATATGTGGAATTGTATGCAAAAGATGAAGATGCATTCTTCAAAGATTATGCTGAATCACACAAGAAACTTTCGGAGCTTGGGTTCACTCCAGGTTCTGCTAAGGCGATTGTGAAAGACAGCCTTGTATTAGCACAGGGTGCCGTTGGAGTTGCGGTTGCAGCTGCTGTGGTAATTTTGAGCTACTTATATGAAGTCCGCAAAAAATCGAAGTAA 861 45.41 MALPVVDTEYLKEIDKARRDLRALIANRNCAPIMLRLAWHDAGTYDVVTKIGGPNGSIRNEEEFSHGSNNGLKKAIDFCEEVKSKHPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNICPKEGHLPDAKKGAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTEDPLKFDNSYFVELLKGETEGLLKLPTDKALLEDPEFRQYVELYAKDEDAFFKDYAESHKKLSELGFTPGSAKAIVKDSLVLAQGAVGVAVAAAVVILSYLYEVRKKSK 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16035569 16040779 + MELO3C013362.2.1 Cme01g01269 318245

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01269 286 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 1 286 IPR044831 GO:0004601|GO:0034599
Cme01g01269 286 Gene3D - 17 243 - -
Cme01g01269 286 CDD ascorbate_peroxidase 4 246 - -
Cme01g01269 286 PRINTS Haem peroxidase superfamily signature 31 45 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme01g01269 286 PRINTS Haem peroxidase superfamily signature 89 106 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme01g01269 286 PRINTS Haem peroxidase superfamily signature 107 119 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme01g01269 286 PRINTS Haem peroxidase superfamily signature 152 167 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme01g01269 286 PRINTS Haem peroxidase superfamily signature 176 191 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme01g01269 286 PRINTS Plant ascorbate peroxidase signature 10 30 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cme01g01269 286 PRINTS Plant ascorbate peroxidase signature 31 46 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cme01g01269 286 PRINTS Plant ascorbate peroxidase signature 49 59 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cme01g01269 286 PRINTS Plant ascorbate peroxidase signature 63 87 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cme01g01269 286 PRINTS Plant ascorbate peroxidase signature 88 106 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cme01g01269 286 PRINTS Plant ascorbate peroxidase signature 107 119 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cme01g01269 286 PRINTS Plant ascorbate peroxidase signature 128 145 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cme01g01269 286 PRINTS Plant ascorbate peroxidase signature 146 167 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cme01g01269 286 PRINTS Plant ascorbate peroxidase signature 168 192 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cme01g01269 286 PRINTS Plant ascorbate peroxidase signature 220 244 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cme01g01269 286 ProSitePatterns Peroxidases proximal heme-ligand signature. 152 162 IPR019793 -
Cme01g01269 286 PANTHER L-ASCORBATE PEROXIDASE 4, PEROXISOMAL-RELATED 1 286 - -
Cme01g01269 286 SUPERFAMILY Heme-dependent peroxidases 11 248 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cme01g01269 286 ProSitePatterns Peroxidases active site signature. 31 42 IPR019794 GO:0004601
Cme01g01269 286 Gene3D Peroxidase, domain 2 130 236 - -
Cme01g01269 286 Pfam Peroxidase 18 224 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme01g01269 286 ProSiteProfiles Plant heme peroxidase family profile. 31 260 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01269 K00434 E1.11.1.11; L-ascorbate peroxidase [EC:1.11.1.11] - csv:101206941 543.502
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01269 Cme-Chr1:16035569 Cme08g00948 Cme-Chr8:6226898 2.35E-118 dispersed
Cme01g01269 Cme-Chr1:16035569 Cme04g01925 Cme-Chr4:26977901 4.96E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g152 . . . . . . . . Cmo19g00742 . . . . . Sed05g2222 . Cpe15g00587 Bhi05g01726 Tan02g0695 Cmetu01g1029 . Hepe02g0430 . . . . . . . . . Cone12ag1229 Cone8ag1280 . . . Csa07g00093 . Cme01g01269 Blo04g00564 . . Bda14g00613 Bpe15g00817 . Bma03g00605 . . . . . . . Car19g00563 . . . . . . . . . . . . . . . . Lsi11g01196 . Chy01g00685 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002255 2 2 2 1 2 2 3 2 2 2 1 2 1 2 2 3 2 4 3 2 2 2 2 2 2 1 2 3 4 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01269 Cme_Chr01 FPKM 66.554359 70.284096 33.146187 32.724827 59.392666 65.134247 60.813831 15.347515 14.882565 14.700776