Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01277 ATGGAAAATGGGGTTGAGGTTGTTGATGGATTGCACGATGGAGAGAAGAAGTTTGTGGGAGATGGTGTTTCACGAGATTGGGTAGATGAAACAGTTGTAGTTGGTTCTCATGAATCTAAGGATACGGAAGGGGAAGATGTTTTTGAGGAGGCATTAGATGGGAAAGATCATTTAATAGAGCAGAGCCCGAAATATATTTCAGTGAATGGCGATATTGCAGAAGAAGAAGAAGGCAATGATTTTACGTCTGGAGTGACTTCTAACCATCCTAACAATGCTCACGATGAAGAGAAGTTTGAAGAAGCAATAGAGGCTTATAGTAGGGTGAATGAAAACCCGGTGGTGGAGGAGCAAGATGTGAATTCTGATAAGGAGACAGAAGGCTTGGATGGGAAATTGGTCGAAAATGCAGTTGTGGCTTCTACAATTGATGAGAGAGGAACTGAAGAGGAAGCAGCGACTTCCGAGTTGAACGAGAGCAAGGATGACGAGTTGGATTTCAGTAGAGATGATTCAAGAAATGAGACATTAGAGAACGGTGCTAGCCCAGAGGTTGTAGTGCTGAAGGATGGGGATGAGGATGATTTGAAATTTGGTCCAATGAGTACGAAGTCTGAAAATAATGATAGTAACAATTTGAATGTGACTTTGCCTTCAGATGATGAATTAGTGAATAAGAGTGCTGATTTGGTAGGGGGGACTAACCTGGATTCTACCAGTGATTTTCTTACTGAAAATCGAGATCATGTGGAACTGAATGGGAAGAGCTTAGGTACGGAGTCCTCAGACCACGTTAAGAAGACTGAGGAGCCATTAAATGCACCCGTTCTAGATTTGGAAAATTTGGATATTACAAATGCAGAGCAAAGGGATGATTCTCTTCACGTGGATCTAGAACTGCCAAACAATGAGAGTGAAGACATGAAAGAGACTACAACTAGTATTGAACCTAAGAAGGATGATAATAAAAATGAAGAAAGCTCTCCAGCCTGCATGACTACCACAAGTCAGGATGACAGGACTGAGGAAGTGACTACCACAAATCAGGATCACAGGAATGAGGAAGTGACTACTGCAGACGAGAATCACCGGATCAAGGAAGTGACTACTGCAGATGAGAATCACCGGATCGAGGAAGTGACTACTGCAGATGAGAATCACCAGATCGAGGAAGTAAAAAATGTTTCTACTGGGAAAGATTCAGAAAAGCAGTCCAGAGTATCTCGTGAATTGAATGGTACTACTTCTGCTGACCAGCATGAATCTATGGGTGAAAATGAAATTCCCCTGGAGACAGTTGAGGATATCTCAGCTTCTGAAAAGATAGCAGATGAGAAAATTGAGAAGATCCAGGGCAGTGAAAGTGATGTGACAGTGAAGGAAGACAATACAACTAGACATCAGCATCCTGTTGATAGTTCCAATAATGGCCCCGACATTTTAGGGGTTGAAAAGACAGAGAGCAAAGATAAGGTTGGACAGGACAAAACTCAAGTGAACAGGGATCCAGAGATTCGACCTGCATCAATCATTGCTTCATCATCTGGTAAATCTACAAATCCCACTCCTCCTGCCCGTCCAGCTGGTCTTGGGCGTGCTGCTCCATTATTGGAACCTGCCCCTCGGGTGGTGCAGCCGCCTCGAGTTAATGGTACTGTATCCCATGTTCAAATGCAACAAATTGATGATCCTGTTAATGGGGATGCTGAGGAAAATGATGATACTCGTGAGCAACTCCAGATGATAAGAGTGAAATTTTTGCGTCTTGCACATAGGCTTGGGCAAACTCCACACAATGTTGTTGTGGCACAAGTTCTATACCGTCTTGGATTAGCTGAGCAACTTCGAGGAAGAAATGGAGGTCGGGTTGGTGCCTTCAGCTTTGACCGTGCCAGTGCCATGGCAGAGCAGCTGGAGGCAGCTGGGCAAGAGCCACTTGATTTCTCTTGTACAATCATGGTTCTTGGAAAGACAGGTGTTGGTAAAAGTGCTACCATCAACTCCATATTTGATGAAGTTAAATTCAGTACTGATGCTTTTCAAATGGGCACAAAAAAGGTTCAAGATGTTGTTGGAACTGTGCAGGGGATCAAAGTACGGGTAATTGACACTCCTGGCCTTCTTTCCTCTTGGTCCGACCAGCGCCAAAATGAGAAGATCCTTCTCTCTGTTAAGCGTTTTATAAAAAAGACACCTCCAGATATTGTTCTGTATCTTGATAGGTTGGACATGCAAACCCGGGATTTCAGTGATATGCCACTCTTGCGTACAATTACTGAAATATTTGGACCATCAATATGGTTCAATGCGATTGTGGTTCTTACTCATGCAGCATCTGCTCCACCTGATGGTCCAAATGGTACTGCTTCTAGTTATGATATGTTTGTCACTCAGCGGTCTCATGTTGTTCAGCAAGCTATACGCCAGGCTGCAGGGGATATGCGCCTTATGAATCCTGTCTCATTAGTGGAGAATCACTCTGCATGCAGAACGAACCGAGCTGGGCAAAGGGTATTGCCGAATGGACAGGTTTGGAAACCTCATTTATTATTGCTCTCATTTGCCTCAAAGATTTTGGCCGAAGCTAACACTCTTCTGAAGTTGCAAGATAGTCCTCCTGGGAGGCCATTTACTCCTAGGTCGAAGTCACCACCTTTACCATTCCTTCTCTCTTCCCTTCTTCAGTCAAGACCTCAAGTTAAACTGCCGGAGGAACAGTTTGGTGATGATGATGGTCTTGAGGATGACCTTGATGAATCGTCAGATTCTGAAAATGAATCTGAATATGATGAATTGCCACCTTTTAAACGGCTGACAAAAGCACAGGTGGCAAAGCTCTCCAAAGCACAGAAGAAGGCCTACTTTGACGAATTGGAATACAGGGAAAAACTTTTTATGAAGAAGCAACTGAAAGAAGAGAAAAGGAGAAGGAAGATGCTGAAGAAAATGGCAGCTGAGGCAAGAGATCAACCCAGGGATGGGAGTGAGAATGTAGAAGAAGATGCTGGTGGTGCTGCTTCAGTACCGGTTCCCATGCCTGATTTGGCATTACCTGCTTCCTTTGATTCTGATAACCCCACTCACCGGTATCGTTATCTCGATTCCTCTAACCAGTGGCTAATAAGGCCTGTACTCGAAACACATGGATGGGATCATGATGTTGGTTATGAAGGTATAAATGCAGAGAAGTTGTTTGTTGTCAAAGACACAATACCTATCTCTTTTAGTGGCCAAGTTACAAAGGATAAGAAGGATGCAAATGTTCAAATAGAGATGACCAGTTCGATTAAGCATGGGGAAACTAAAGCATCTTCCATTGGTTTCGATATGCAGACCGTTGGAAAGGATTTGGCCTATACATTACGTGGCGAGACAACATTTATTAATTTTAGGAAGAACAAGGCAATTGCTGGTCTGTCAGTTGCCCTATTGGGCGATGCCTTGTCTGCTGGATTCAAAGTTGAAGACAAGTTGATTGCTAATAAGCGATTTCGATTGGTTGTGACTGGGGGAGCAATGACCGGTAGGGGAGATGTAGCTTATGGTGGCAGCCTGGAGGCTCAATTGAGAGATAAAGACTATCCTTTGGGTCGTTCACTTTCAACTCTTGGGCTCTCAGTCATGGATTGGCATGGAGATCTTGCTATTGGTTGCAATGTACAATCTCAAGTTCCCATTGGACGATCGACGAATCTGATTGCTCGTGTGAATCTGAATAACAGGGGGGCAGGGCAAGTCAGCTTTCGGTTAAACAGCTCAGAACAGCTTCAGATAGCTATTGTCGGGCTCCTTCCTCTATTGAGAAAGCTTCTGGGTTGTTATCAATACTGGCAGGATGGACAATGA 3846 43.92 MENGVEVVDGLHDGEKKFVGDGVSRDWVDETVVVGSHESKDTEGEDVFEEALDGKDHLIEQSPKYISVNGDIAEEEEGNDFTSGVTSNHPNNAHDEEKFEEAIEAYSRVNENPVVEEQDVNSDKETEGLDGKLVENAVVASTIDERGTEEEAATSELNESKDDELDFSRDDSRNETLENGASPEVVVLKDGDEDDLKFGPMSTKSENNDSNNLNVTLPSDDELVNKSADLVGGTNLDSTSDFLTENRDHVELNGKSLGTESSDHVKKTEEPLNAPVLDLENLDITNAEQRDDSLHVDLELPNNESEDMKETTTSIEPKKDDNKNEESSPACMTTTSQDDRTEEVTTTNQDHRNEEVTTADENHRIKEVTTADENHRIEEVTTADENHQIEEVKNVSTGKDSEKQSRVSRELNGTTSADQHESMGENEIPLETVEDISASEKIADEKIEKIQGSESDVTVKEDNTTRHQHPVDSSNNGPDILGVEKTESKDKVGQDKTQVNRDPEIRPASIIASSSGKSTNPTPPARPAGLGRAAPLLEPAPRVVQPPRVNGTVSHVQMQQIDDPVNGDAEENDDTREQLQMIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGGRVGAFSFDRASAMAEQLEAAGQEPLDFSCTIMVLGKTGVGKSATINSIFDEVKFSTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLSSWSDQRQNEKILLSVKRFIKKTPPDIVLYLDRLDMQTRDFSDMPLLRTITEIFGPSIWFNAIVVLTHAASAPPDGPNGTASSYDMFVTQRSHVVQQAIRQAAGDMRLMNPVSLVENHSACRTNRAGQRVLPNGQVWKPHLLLLSFASKILAEANTLLKLQDSPPGRPFTPRSKSPPLPFLLSSLLQSRPQVKLPEEQFGDDDGLEDDLDESSDSENESEYDELPPFKRLTKAQVAKLSKAQKKAYFDELEYREKLFMKKQLKEEKRRRKMLKKMAAEARDQPRDGSENVEEDAGGAASVPVPMPDLALPASFDSDNPTHRYRYLDSSNQWLIRPVLETHGWDHDVGYEGINAEKLFVVKDTIPISFSGQVTKDKKDANVQIEMTSSIKHGETKASSIGFDMQTVGKDLAYTLRGETTFINFRKNKAIAGLSVALLGDALSAGFKVEDKLIANKRFRLVVTGGAMTGRGDVAYGGSLEAQLRDKDYPLGRSLSTLGLSVMDWHGDLAIGCNVQSQVPIGRSTNLIARVNLNNRGAGQVSFRLNSSEQLQIAIVGLLPLLRKLLGCYQYWQDGQ 1281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16143740 16148462 + MELO3C013370.2.1 Cme01g01277 318253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01277 1281 MobiDBLite consensus disorder prediction 117 131 - -
Cme01g01277 1281 MobiDBLite consensus disorder prediction 144 177 - -
Cme01g01277 1281 Gene3D - 619 867 IPR027417 -
Cme01g01277 1281 MobiDBLite consensus disorder prediction 343 407 - -
Cme01g01277 1281 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 643 784 IPR027417 -
Cme01g01277 1281 ProSiteProfiles AIG1-type G domain profile. 647 876 IPR006703 GO:0005525
Cme01g01277 1281 MobiDBLite consensus disorder prediction 327 342 - -
Cme01g01277 1281 Pfam Translocase of chloroplast 159/132, membrane anchor domain 1008 1271 IPR024283 -
Cme01g01277 1281 MobiDBLite consensus disorder prediction 252 273 - -
Cme01g01277 1281 MobiDBLite consensus disorder prediction 904 934 - -
Cme01g01277 1281 Pfam AIG1 family 650 783 IPR006703 GO:0005525
Cme01g01277 1281 MobiDBLite consensus disorder prediction 408 422 - -
Cme01g01277 1281 CDD Toc34_like 622 867 - -
Cme01g01277 1281 Coils Coil 970 990 - -
Cme01g01277 1281 MobiDBLite consensus disorder prediction 483 502 - -
Cme01g01277 1281 PANTHER TRANSLOCASE OF CHLOROPLAST 120, CHLOROPLASTIC-LIKE 428 1273 - -
Cme01g01277 1281 MobiDBLite consensus disorder prediction 437 468 - -
Cme01g01277 1281 MobiDBLite consensus disorder prediction 284 326 - -
Cme01g01277 1281 MobiDBLite consensus disorder prediction 252 532 - -
Cme01g01277 1281 MobiDBLite consensus disorder prediction 983 999 - -
Cme01g01277 1281 PANTHER GTPASE, IMAP FAMILY MEMBER-RELATED 428 1273 IPR045058 -
Cme01g01277 1281 MobiDBLite consensus disorder prediction 983 1009 - -
Cme01g01277 1281 TIGRFAM 3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains 526 1274 IPR005690 GO:0003924|GO:0005525|GO:0009707|GO:0045036
Cme01g01277 1281 MobiDBLite consensus disorder prediction 908 928 - -
Cme01g01277 1281 MobiDBLite consensus disorder prediction 110 213 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01277 - - - cmo:103490300 2426.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01277 Cme-Chr1:16143740 Cme07g02149 Cme-Chr7:26007532 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g129 . . . . . Bpe12g00112 . . Cmo19g00737 . . . . . Sed08g0469 . Cpe15g00583 Bhi05g01734 Tan02g0702 Cmetu06g1183 . Hepe02g0438 . . Cla02g00439 Cam02g0448 Cec02g0446 Cco02g0466 Clacu02g0450 Cmu02g0444 Cre02g0778 Cone2ag0203 Cone16ag0840 . . . Csa07g00087 . Cme01g01277 Blo04g00558 Blo13g00521 . Bda14g00607 Bpe15g00822 . Bma03g00599 Bma08g00616 . . . Cma11g01385 Cma19g00728 . Car19g00558 . . . . . . . . . . . . . . . . Lsi11g01187 . Chy01g00691 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005811 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01277 Cme_Chr01 FPKM 6.367772 6.012596 8.203637 9.174216 4.770862 4.87637 5.430318 16.73683 15.247744 16.55945