Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme01g01280 | ATGGCGGCAATGGTTTCTTCTCCATGGGGAAAACCCGGCGCTTGGGCCCTCGATTCTGAGGAACACGAAGCTCAACTCCTTAAAGAACAGGAACAGCAGAAACAACCTGAACTCAGCCTCGATTTCCCCTCCCTCAACGACGCCTTAGCCACCAAGCAGAAGAAGAAAGGCCAAACTCTCTCATTAGCCGAGTTCAACACCTATGGAACTACCGATTCGAGATCTGAGGATTTTATGGAACTACCCACCGGCCCTCGCCAACGGACGGCGGAGGAGCTCGACCGGAACAGGCTCGGTGGTGGGTTCAGGAATTATGGTTCGAATGGTTCGTATGAAAGGAATAATAGGTATTCTAATGCGGATGATTCGTCTAATTCGAAGTGGGGTTCTTCTAGGGTTTCTGATGAGAATCGGAGGAGTAGTAATGGGTCTAATAGAGCGGATTCGAGTAAGGAATTTACATCTTCTAGAGCTGATGAGGTTGATAATTGGGCTTTAACTAAGAAGCCCATGGCTGGGAATGGATTCGAGAGAAGGGAGAGAGGATTAGGGTTTTCGGATTCGCAATCGTCGAAAGCCGATGAATCAGAGAGTTGGGTTTCTAATAAGAGCAATATTCCGTCCGGTGGAAGGAGATTTGACAGAGAGCGACGAGGAGGGTTCACAGCGAGCGGCGGCGGGGCAGATTCAGACAATTGGGGGAGGAAGAAAGAGGAAGGTAATGCCGGTGGCGTCATTGGTAGTCGGCCAAAGCTTAGTCTACAGCCACGTACGTTGCCGGTTGGCGATGGGAAATCGTCGGAGATATCAGCGACAGCAGCGAGGTCCAAGAGTTCGAACCCATTTGGAGCAGCGAGGCCGAGGGAAGAGGTACTAGCCGAGAAGGGACATGACTGGAAAAAGCTTGACGAGCAGCTAGAGTCGAAGATTAAGGAGGTGTCAGTGGAGGAGAAGACAGAAAAATCTAACGCCATTTCCTTTAGGAAAAGGAGCTTTGACAATGGAAATAGCCGGGCTGCTGAGGACAGAACAGAGAAGAGCTGGAGAAAACCGGAGTCGCCACCGCCACAGGAGTCTCCGGAATCTCGTCCCGAAAGTGGAGAGGAAAATGTAAATGGAGATTGCGAAGGCAAACGCGAACACGACGGGGACGAGAATGGAGCTTGA | 1167 | 50.9 | MAAMVSSPWGKPGAWALDSEEHEAQLLKEQEQQKQPELSLDFPSLNDALATKQKKKGQTLSLAEFNTYGTTDSRSEDFMELPTGPRQRTAEELDRNRLGGGFRNYGSNGSYERNNRYSNADDSSNSKWGSSRVSDENRRSSNGSNRADSSKEFTSSRADEVDNWALTKKPMAGNGFERRERGLGFSDSQSSKADESESWVSNKSNIPSGGRRFDRERRGGFTASGGGADSDNWGRKKEEGNAGGVIGSRPKLSLQPRTLPVGDGKSSEISATAARSKSSNPFGAARPREEVLAEKGHDWKKLDEQLESKIKEVSVEEKTEKSNAISFRKRSFDNGNSRAAEDRTEKSWRKPESPPPQESPESRPESGEENVNGDCEGKREHDGDENGA | 388 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 16162001 | 16163754 | - | MELO3C013373.2.1 | Cme01g01280 | 318256 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme01g01280 | 388 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B | 1 | 353 | IPR010433 | GO:0003743 | |
| Cme01g01280 | 388 | MobiDBLite | consensus disorder prediction | 313 | 388 | - | - | |
| Cme01g01280 | 388 | MobiDBLite | consensus disorder prediction | 63 | 291 | - | - | |
| Cme01g01280 | 388 | MobiDBLite | consensus disorder prediction | 334 | 352 | - | - | |
| Cme01g01280 | 388 | MobiDBLite | consensus disorder prediction | 63 | 77 | - | - | |
| Cme01g01280 | 388 | Pfam | Plant specific eukaryotic initiation factor 4B | 6 | 324 | IPR010433 | GO:0003743 | |
| Cme01g01280 | 388 | MobiDBLite | consensus disorder prediction | 313 | 327 | - | - | |
| Cme01g01280 | 388 | MobiDBLite | consensus disorder prediction | 107 | 151 | - | - | |
| Cme01g01280 | 388 | MobiDBLite | consensus disorder prediction | 186 | 208 | - | - | |
| Cme01g01280 | 388 | MobiDBLite | consensus disorder prediction | 362 | 388 | - | - | |
| Cme01g01280 | 388 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B3 | 1 | 353 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cme01g01280 | Cme11g00411 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme03g02216 | Cme-Chr3:29025923 | Cme01g01280 | Cme-Chr1:16162001 | 3.36E-43 | transposed | |
| Cme01g01280 | Cme-Chr1:16162001 | Cme11g00411 | Cme-Chr11:4100462 | 6.10E-113 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme01g01280 | - | - | csv:101206224 | 667.537 |